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cluster:134 [2014/08/19 15:03] hmeij [High Throughput] |
cluster:134 [2014/08/21 16:00] hmeij |
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[[https:// | [[https:// | ||
+ | |||
+ | Vanilla out of the box with these changes | ||
* MaxJobCount=120000 | * MaxJobCount=120000 | ||
Line 121: | Line 123: | ||
After fixing that. Hmmm. | After fixing that. Hmmm. | ||
- | ^NrJobs^N^hh:mm^N^hh:mm^ | + | ^NrJobs^N^hh: |
| 1, | | 1, | ||
|10, | |10, | ||
Line 128: | Line 130: | ||
- | Debug Level is 3. Falling back to proctrack/ | + | Debug Level is 3 above. Falling back to proctrack/ |
- | (I also added a proplog/ | + | ^NrJobs^N^hh: |
+ | | 1, | ||
+ | |10, | ||
+ | |25, | ||
+ | |50, | ||
+ | |75, | ||
+ | |100, | ||
+ | |||
+ | | ||
+ | / | ||
+ | |||
+ | < | ||
+ | # | ||
+ | / | ||
+ | |||
+ | #SBATCH --job-name=" | ||
+ | #SBATCH --output=" | ||
+ | #SBATCH --begin=10: | ||
+ | |||
+ | # unique job scratch dir | ||
+ | export MYLOCALSCRATCH=/ | ||
+ | cd $MYLOCALSCRATCH | ||
+ | pwd | ||
+ | |||
+ | echo " | ||
+ | date >> foo | ||
+ | cat foo | ||
+ | |||
+ | / | ||
+ | </ | ||
+ | |||
+ | |||
+ | ^NrJobs^N^hh: | ||
+ | | 1, | ||
+ | | 5, | ||
+ | |10, | ||
+ | |25, | ||
+ | |||
+ | |||
+ | ==== MPI ==== | ||
+ | |||
+ | With sbatch there is no need for a wrapper script, slurm figures it all out. | ||
+ | |||
+ | < | ||
+ | |||
+ | # | ||
+ | #/ | ||
+ | |||
+ | #SBATCH --job-name=" | ||
+ | #SBATCH --ntasks=8 | ||
+ | #SBATCH --begin=now | ||
+ | |||
+ | # unique job scratch dir | ||
+ | #export MYLOCALSCRATCH=/ | ||
+ | #cd $MYLOCALSCRATCH | ||
+ | |||
+ | echo " | ||
+ | |||
+ | rm -rf err out logfile mdout restrt mdinfo | ||
+ | |||
+ | export PATH=/ | ||
+ | export LD_LIBRARY_PATH=/ | ||
+ | which mpirun | ||
+ | |||
+ | mpirun / | ||
+ | |||
+ | #/ | ||
+ | |||
+ | </ | ||
\\ | \\ | ||
**[[cluster: | **[[cluster: |