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cluster:134 [2014/08/20 09:03] hmeij [High Throughput] |
cluster:134 [2014/08/21 16:00] hmeij |
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[[https:// | [[https:// | ||
+ | |||
+ | Vanilla out of the box with these changes | ||
* MaxJobCount=120000 | * MaxJobCount=120000 | ||
Line 130: | Line 132: | ||
Debug Level is 3 above. Falling back to proctrack/ | Debug Level is 3 above. Falling back to proctrack/ | ||
- | ^NrJobs^N^hh: | + | ^NrJobs^N^hh: |
| 1, | | 1, | ||
|10, | |10, | ||
Line 138: | Line 140: | ||
|100, | |100, | ||
- | Now I also added a proplog/ | + | Next I will add a proplog/ |
/ | / | ||
+ | < | ||
+ | #!/bin/bash | ||
+ | / | ||
+ | #SBATCH --job-name=" | ||
+ | #SBATCH --output=" | ||
+ | #SBATCH --begin=10: | ||
+ | |||
+ | # unique job scratch dir | ||
+ | export MYLOCALSCRATCH=/ | ||
+ | cd $MYLOCALSCRATCH | ||
+ | pwd | ||
+ | |||
+ | echo " | ||
+ | date >> foo | ||
+ | cat foo | ||
+ | |||
+ | / | ||
+ | </ | ||
+ | |||
+ | |||
+ | ^NrJobs^N^hh: | ||
+ | | 1, | ||
+ | | 5, | ||
+ | |10, | ||
+ | |25, | ||
+ | |||
+ | |||
+ | ==== MPI ==== | ||
+ | |||
+ | With sbatch there is no need for a wrapper script, slurm figures it all out. | ||
+ | |||
+ | < | ||
+ | |||
+ | #!/bin/bash | ||
+ | #/ | ||
+ | |||
+ | #SBATCH --job-name=" | ||
+ | #SBATCH --ntasks=8 | ||
+ | #SBATCH --begin=now | ||
+ | |||
+ | # unique job scratch dir | ||
+ | #export MYLOCALSCRATCH=/ | ||
+ | #cd $MYLOCALSCRATCH | ||
+ | |||
+ | echo " | ||
+ | |||
+ | rm -rf err out logfile mdout restrt mdinfo | ||
+ | |||
+ | export PATH=/ | ||
+ | export LD_LIBRARY_PATH=/ | ||
+ | which mpirun | ||
+ | |||
+ | mpirun / | ||
+ | |||
+ | #/ | ||
+ | |||
+ | </ | ||
\\ | \\ | ||
**[[cluster: | **[[cluster: |