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cluster:164 [2017/10/30 10:02] hmeij07 [PPMA Bench] |
cluster:164 [2017/11/17 12:28] hmeij07 [FSL] |
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Line 637: | Line 637: | ||
# comparison of binaries running PMMA | # comparison of binaries running PMMA | ||
+ | # 1 gpu 4 mpi threads each run | ||
# lmp_mpi-double-double-with-gpu.log | # lmp_mpi-double-double-with-gpu.log | ||
Line 644: | Line 645: | ||
# lmp_mpi-single-single-with-gpu.log | # lmp_mpi-single-single-with-gpu.log | ||
Performance: | Performance: | ||
+ | |||
+ | </ | ||
+ | |||
+ | ==== FSL ==== | ||
+ | |||
+ | **User Time Reported** from time command | ||
+ | |||
+ | * mwgpu cpu run | ||
+ | * 2013 model name : Intel(R) Xeon(R) CPU E5-2660 0 @ 2.20GHz | ||
+ | * All tests 45m | ||
+ | * Bft test 16m28s (bedpostx) | ||
+ | |||
+ | * amber128 cpu run | ||
+ | * 2017 model name : Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz | ||
+ | * All tests 17m - 2.5x faster | ||
+ | * Bft test 3m39s - 6x faster (bedpostx) | ||
+ | |||
+ | * amber128 gpu run | ||
+ | * 2017 CUDA Device Name: GeForce GTX 1080 Ti | ||
+ | * Bft gpu test 0m1.881s (what!? from command line) - 116x faster (bedpostx_gpu) | ||
+ | * Bft gpu test 0m1.850s (what!? via scheduler) - 118x faster (bedpostx_gpu) | ||
+ | |||
+ | |||
+ | ==== FreeSurfer ==== | ||
+ | |||
+ | |||
+ | * http:// | ||
+ | * Example using sample-001.mgz | ||
+ | |||
+ | < | ||
+ | |||
+ | Node n37 (mwgpu cpu run) | ||
+ | (2013) Intel(R) Xeon(R) CPU E5-2660 0 @ 2.20GHz | ||
+ | recon-all -s bert finished without error | ||
+ | example 1 user 0m3.516s | ||
+ | example 2 user 893m1.761s ~15 hours | ||
+ | example 3 user ???m ~15 hours (estimated) | ||
+ | |||
+ | Node n78 (amber128 cpu run) | ||
+ | (2017) Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz | ||
+ | recon-all -s bert finished without error | ||
+ | example 1 user 0m2.315s | ||
+ | example 2 user 488m49.215s ~8 hours | ||
+ | example 3 user 478m44.622s ~8 hours | ||
+ | |||
+ | |||
+ | freeview -v \ | ||
+ | bert/ | ||
+ | bert/ | ||
+ | bert/ | ||
+ | bert/ | ||
+ | -f \ | ||
+ | bert/ | ||
+ | bert/ | ||
+ | bert/ | ||
+ | bert/ | ||
</ | </ | ||
+ | Development code for the GPU http:// | ||
+ | |||
\\ | \\ | ||
**[[cluster: | **[[cluster: |