cluster:172
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
cluster:172 [2018/08/23 14:02] hmeij07 [Gromacs] |
cluster:172 [2018/08/23 18:17] hmeij07 [Note] |
||
|---|---|---|---|
| Line 20: | Line 20: | ||
| * unmount NFS mounts while installing nvidia as root | * unmount NFS mounts while installing nvidia as root | ||
| * install other software as regular user | * install other software as regular user | ||
| - | * | ||
| ==== Nvidia ==== | ==== Nvidia ==== | ||
| Line 274: | Line 273: | ||
| As root install | As root install | ||
| - | * yum install | + | * cmake, latest version, never understand why so far ahead of distro... |
| Download and extract source. Using same environment as Amber compilation. | Download and extract source. Using same environment as Amber compilation. | ||
| + | |||
| + | < | ||
| + | |||
| + | cd gromacs-2018/ | ||
| + | mkdir build | ||
| + | cd build | ||
| + | |||
| + | which mpicc mpicxx | ||
| + | / | ||
| + | / | ||
| + | |||
| + | | ||
| + | / | ||
| + | -DCMAKE_INSTALL_PREFIX=/ | ||
| + | -DGMX_BUILD_OWN_FFTW=ON -DGMX_MPI=ON -DGMX_GPU=ON | ||
| + | | ||
| + | | ||
| + | |||
| + | </ | ||
| ==== Lammps ==== | ==== Lammps ==== | ||
| Line 293: | Line 311: | ||
| * consulting the ARCH web page I choose -arch=sm_35 | * consulting the ARCH web page I choose -arch=sm_35 | ||
| - | Good thing we're doing this now, future versions of CUDA will not support the K20s anymore. In fact on that web site they are not mentioned, only the K40/K80 gpus. So we'll see what testing reveals. | + | Good thing we're doing this now, future versions of CUDA will not support the K20s anymore. In fact on that web site they are not mentioned, only the K40/K80 gpus. So we'll see what testing reveals. |
| < | < | ||
| Line 307: | Line 325: | ||
| ==== mapd ==== | ==== mapd ==== | ||
| + | * https:// | ||
| + | |||
| + | < | ||
| + | |||
| + | useradd -U mapd | ||
| + | |||
| + | # mapd.repo | ||
| + | [mapd-ce-cuda] | ||
| + | name=mapd ce - cuda | ||
| + | baseurl=https:// | ||
| + | gpgcheck=1 | ||
| + | gpgkey=https:// | ||
| + | |||
| + | yum install \ | ||
| + | copy-jdk-configs java-1.8.0-openjdk-headless \ | ||
| + | javapackages-tools libxslt \ | ||
| + | lksctp-tools python-javapackages \ | ||
| + | python-lxml tzdata-java \ | ||
| + | mapd | ||
| + | # n37:/ | ||
| + | |||
| + | # User specific aliases and functions | ||
| + | export MAPD_USER=mapd | ||
| + | export MAPD_GROUP=mapd | ||
| + | export MAPD_STORAGE=/ | ||
| + | export MAPD_PATH=/ | ||
| + | # The $MAPD_STORAGE directory must be dedicated to MapD | ||
| + | |||
| + | </ | ||
| + | |||
| + | ==== Finish ==== | ||
| + | * Make the final tar file for /usr/local and post with CHROOT | ||
| + | * Install all the packages of this page in CHROOT | ||
| \\ | \\ | ||
| **[[cluster: | **[[cluster: | ||
cluster/172.txt ยท Last modified: 2020/07/15 17:52 by hmeij07
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
