Differences

This shows you the differences between two versions of the page.

--- cluster:172 [2018/08/23 18:17]
hmeij07 [mapd]
+++ cluster:172 [2020/07/15 17:52]
hmeij07
@@ Line 20: / Line 20: @@
   * unmount NFS mounts while installing nvidia as root
   * install other software as regular user
-  *
 ==== Nvidia ====
@@ Line 34: / Line 33: @@
 yum update kernel kernel-tools kernel-tools-libs
 yum install kernel-devel kernel-headers (remove old headers after reboot)
-yum install gcc gcc-devel gcc-gfortran gcc-c++
+yum install gcc gcc-gfortran gcc-c++  # CHROOT done
+yum install tcl tcl-devel # CHROOT done
+# /etc/modprobe.d/blacklist-nouveau.conf (new file by nvidia)
+# reboot before driver installation # CHROOT done
+blacklist nouveau
+options nouveau modeset=0
+# new kernel initramfs, load
+dracut --force
+reboot
 # download runfiles from https://developer.nvidia.com/cuda-downloads
-sh cuda_name_of_runfile
+# files in /usr/local/src
-sh cuda_name_of_runfile_patch
+sh cuda_9.2.148_396.37_linux.run
 Install NVIDIA Accelerated Graphics Driver for Linux-x86_64 396.26?
@@ Line 54: / Line 66: @@
 Install the CUDA 9.2 Samples?
 (y)es/(n)o/(q)uit: n
-#/etc/modprobe.d/blacklist-nouveau.conf, reboot before driver instllation
-blacklist nouveau
-options nouveau modeset=0
-reboot
 # nvidia driver
 ./cuda_name_of_runfile -silent -driver
+# Device files/dev/nvidia* exist with 0666 permissions?
+# They were not
+/usr/local/src/nvidia-modprobe.sh
 # backup
 [root@n37 src]# rpm -qf /usr/lib/libGL.so
 file /usr/lib/libGL.so is not owned by any package
-cp /usr/lib/libGL.so /usr/lib/libGL.so-nvidia
+cp /usr/lib/libGL.so.1.7.0   /usr/lib/libGL.so.1.7.0-nvidia
+cp /usr/lib64/libGl.so.1.7.0 /usr/lib64/libGL.so.1.7.0-nvidia
 [root@n37 src]# ls /etc/X11/xorg.conf
@@ Line 72: / Line 84: @@
 [root@n37 src]# find /usr/local/cuda-9.2 -name nvidia-xconfig*
 [root@n37 src]#
-[root@n37 src]# scp n78:/etc/X11/xorg.conf /etc/X11/
+[root@n37 src]# scp n78:/etc/X11/xorg.conf /etc/X11/  # CHROOT done
-# Device files/dev/nvidia* exist with 0666 permissions?
+# for mapd graphics support needs to be enabled
-# They were not
+nvidia-smi --gom=0
-/usr/local/src/nvidia-modprobe.sh
+# have left persistence and exclusivity at defaults for now
-# new kernel initramfs, load
-dracut --force
 reboot
@@ Line 157: / Line 167: @@
 ** Finish **
-  * yum install freeglut-devel libX11-devel libXi-devel libXmu-devel \ make mesa-libGLU-devel
+  * yum install freeglut-devel libX11-devel libXi-devel libXmu-devel \ make mesa-libGLU-devel # CHROOT done
+  * yum install blas blas-devel lapack lapack-devel #CHROOT done
   * check for /usr/lib64/libvdpau_nvidia.so
   * [root@n37 /]# tar -cvf /tmp/n37.chroot.ul.tar usr/local
   * [root@n37 /]# scp /tmp/n37.chroot.ul.tar sms_server:/var/chroots/goldimages/
@@ Line 167: / Line 179: @@
 <code>
-# As root check requirements
+# centos7
-rpm -qa | grep ^gcc
+yum -y install tcsh make \
-rpm -qa | grep ^g++
+               gcc gcc-gfortran gcc-c++ \
+               which flex bison patch bc \
+               libXt-devel libXext-devel \
+               perl perl-ExtUtils-MakeMaker util-linux wget \
+               bzip2 bzip2-devel zlib-devel tar
+</code>
+<code>
+# As root check requirements # CHROOT done
 rpm -qa | grep ^flex
 rpm -qa | grep ^tcsh
@@ Line 187: / Line 207: @@
 rpm -qa | grep ^bison
-# As root install missing
+# As root install missing # CHROOT done
-yum install flex bzip2-devel libXdmcp zlib zlib-devel
+# CHROOT done
-yum install tkinter openmpi perl-ExtUtils-MakeMaker patch bison
 </code>
@@ Line 296: / Line 315: @@
 </code>
 ==== Lammps ====
 As root install
-  * yum install libjpeg libjpeg-devel libjpeg-turbo libjpeg-turbo-devel
+  * yum install libjpeg libjpeg-devel libjpeg-turbo libjpeg-turbo-devel # CHROOT done
-  * yum install blas blas-devel lapack lapack-devel boost boost-devel
+  * yum install blas blas-devel lapack lapack-devel boost boost-devel # CHROOT done
 For Lammps-22Aug18 I followed the top installation instructions at this page
@@ Line 310: / Line 330: @@
   * to stay with openmpi-1.8.4 (not mpich3...)
-  * consulting the ARCH web page I choose -arch=sm_35
+  * consulting the ARCH web page I choose -arch=sm_35 (on n37 for K20)
-Good thing we're doing this now, future versions of CUDA will not support the K20s anymore. In fact on that web site they are not mentioned, only the K40/K80 gpus. So we'll see what testing reveals.  Please double check results against previous runs. Compile as regular user and stage lmp_mpi in /usr/local/lammps-22Aug10/
+Good thing we're doing this now, future versions of CUDA will not support the K20s anymore. In fact on that web site they are not mentioned, only the K40/K80 gpus. So we'll see what testing reveals.  Please double check results against previous runs. Compile as regular user and stage lmp_mpi in /usr/local/lammps-22Aug18/
 <code>
@@ Line 318: / Line 338: @@
 [hmeij@n37 src]$ ll /usr/local/lammps-22Aug18/
 total 104356
--rwxr-xr-x 1 hmeij its 35739800 Aug 23 08:49 lmp_mpi-double-double-with-cuda
+-rwxr-xr-x 1 hmeij its 35739800 Aug 23 08:49 lmp_mpi-double-double-with-gpu
--rwxr-xr-x 1 hmeij its 35555672 Aug 23 09:11 lmp_mpi-single-double-with-cuda
+-rwxr-xr-x 1 hmeij its 35555672 Aug 23 09:11 lmp_mpi-single-double-with-gpu
--rwxr-xr-x 1 hmeij its 35559552 Aug 23 09:53 lmp_mpi-single-single-with-cuda
+-rwxr-xr-x 1 hmeij its 35559552 Aug 23 09:53 lmp_mpi-single-single-with-gpu
 </code>
@@ Line 343: / Line 363: @@
   javapackages-tools libxslt \
   lksctp-tools python-javapackages \
-  python-lxml tzdata-java \
+  python-lxml tzdata-java  nfs-utils psmisc lm_sensors
-  mapd
+  # CHROOT done
-  # n37:/usr/local/src
+yum install mapd   # n37:/usr/local/src
 # User specific aliases and functions
@@ Line 358: / Line 379: @@
 ==== Finish ====
-  * Make the final tar file for /usr/local and post with CHROOT
+  * Make the final tar file for /usr/local and post with CHROOT # done
-  * Install all the packages of this page in CHROOT
+  * Install all the packages of this page in CHROOT # marked done
+To do another node, the steps are
+  * add node in deploy.txt of n36.chroot/  (centos 7.2)
+  * ./deploy.txt `grep node_name deploy.txt`
+  * umount -a
+  * ONBOOT=no, ib0 ??? connectX mlx4_0 IB interface breaks in CentOS 7.3+
+  * bootlocal=EXIT then reboot then check polkit user … screws up systemd-logind
+  * hostnamectl set-hostname node_name (logout/login)
+  * eth1 on 129.133
+  * yum update
+  * yum install kernel-headers kernel-devel epel-release
+  * put n37 tarball in /, unpack
+  * remove cuda-9.2
+  * Nvidia install: files in /usr/local/src
+    * remove nouveau
+    * disable selinux, NetworkManager, firewalld
+    * reboot
+    * sh runfile
+    * ./runfile -silent -driver
+    * install all CHROOT done packages
+    * yum clean all
+    * reboot
+  * custom fstab
+  * mount on 10.10
+  * authorized_keys
+  * scp in place from global archive...make backups
+  * passwd, shadow, group, hosts
+  * reboot for polkit, check /etc/ssh/ssh_host* perms/owners
+  * /share/apps/src/openlava3 install in centOS7
+  * systemctl enable
+  * eth1 on 10.10, mounts ok?
+  * /etc/default/grub add "nomodeset" and GRUB_RECORDFAIL_TIMEOUT (grub2-mkconfig -o /boot/grub2/grub.cfg)
+    * did not help the count down
+    * did fix the text console
+  * rc.local, crontab
+  * reboot
+Finished rebuilding n33-n37 based on n37 example.
+ --- //[[hmeij@wesleyan.edu|Henk]] 2018/10/11 10:04//
 \\
 **[[cluster:0|Back]]**

DokuWiki

User Tools

Site Tools

Differences

Page Tools