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cluster:182 [2019/08/12 16:19]
hmeij07 [Amber]
cluster:182 [2019/08/12 16:28]
hmeij07 [Scripts]
Line 68: Line 68:
 3, Tesla P100-PCIE-16GB, 78, 1052 MiB, 15228 MiB, 94 %, 0 %\\ 3, Tesla P100-PCIE-16GB, 78, 1052 MiB, 15228 MiB, 94 %, 0 %\\
  
 +==== Lammps ====
  
  
 +
 +
 +^  ns/day  ^  P100[1]  ^  P100[4]  ^  RTX[1]  ^  T4[1]  ^  T4[4]  ^  Notes  ^
 +|  DPFP  |  |  |  |  |  |
 +|  SXFP  |  |  |  |  |  |
 +|  SFFP  |  |  |  |  |  |
 ==== Scripts ==== ==== Scripts ====
 +
 +All 3 software applications were compiled within default environment and Cuda 10.1
 +
 +Currently Loaded Modules:\\
 +  1) GCCcore/8.2.0     4) GCC/8.2.0-2.31.1   7) XZ/5.2.4           10) hwloc/1.11.11   13) FFTW/3.3.8\\
 +  2) zlib/1.2.11       5) CUDA/10.1.105      8) libxml2/2.9.8      11) OpenMPI/3.1.3   14) ScaLAPACK/2.0.2-OpenBLAS-0.3.5\\
 +  3) binutils/2.31.1   6) numactl/2.0.12     9) libpciaccess/0.14  12) OpenBLAS/0.3.5  15) fosscuda/2019a\\
 +
 +Follow\\
 +https://dokuwiki.wesleyan.edu/doku.php?id=cluster:161\\
  
   * Amber   * Amber
Line 94: Line 111:
 </code> </code>
  
 +  * Lammps
  
 +<code>
 +
 +#!/bin/bash
 +
 +#SBATCH --nodes=1
 +#SBATCH --nodelist=node5
 +#SBATCH --job-name="RTX dd"
 +#SBATCH --gres=gpu:1
 +#SBATCH --ntasks-per-node=1
 +#SBATCH --exclusive
 +
 +# RTX
 +mpirun --oversubscribe -x LD_LIBRARY_PATH -np 1 \
 +-H localhost \
 +~/lammps-5Jun19/lmp_mpi_double_double -suffix gpu -pk gpu 1 \
 +-in in.colloid > rtx-1:1
 +
 +[heme@login1 lammps-5Jun19]$ squeue
 +             JOBID PARTITION     NAME     USER ST       TIME  NODES NODELIST(REASON)
 +              2239    normal   RTX dd     heme  R       3:17      1 node5
 +
 +[heme@login1 lammps-5Jun19]$ ssh node5 ./gpu-info
 +id,name,temp.gpu,mem.used,mem.free,util.gpu,util.mem
 +0, Quadro RTX 6000, 50, 186 MiB, 24004 MiB, 51 %, 0 %
 +
 +</code>
 \\ \\
 **[[cluster:0|Back]]** **[[cluster:0|Back]]**
cluster/182.txt ยท Last modified: 2019/12/13 13:33 by hmeij07