Differences
This shows you the differences between two versions of the page.
| Both sides previous revision
Previous revision
Next revision
|
Previous revision
Next revision
Both sides next revision
|
cluster:192 [2020/02/26 18:40]
hmeij07 [Usage] |
cluster:192 [2020/02/26 19:47]
hmeij07 [Usage] |
| ==== Usage ==== | ==== Usage ==== |
| |
| The new queue ''exx96'' will be comprised of nodes ''n79-n90''. Each node holds 4x RTX2080S gpus, 2x Xeon Silver 4214 2.2 Ghz cpus, 96 GB memory and a 1TB SSD. ''/localscratch'' is around 800 GD. | The new queue ''exx96'' will be comprised of nodes ''n79-n90''. Each node holds 4x RTX2080S gpus, 2x Xeon Silver 4214 2.2 Ghz 12-core cpus, 96 GB memory and a 1TB SSD. ''/localscratch'' is around 800 GB. |
| |
| A new static resource is introduced for all nodes holding gpus. ''n78'' in queue ''amber128'' and ''n33-n37'' in queue ''mwgpu'' and the nodes mentioned above. The name of this resource is ''gpu4''. Moving forward please use it instead of ''gpu'' or ''gputest''. | A new static resource is introduced for all nodes holding gpus. ''n78'' in queue ''amber128'' and ''n33-n37'' in queue ''mwgpu'' and the nodes mentioned above. The name of this resource is ''gpu4''. Moving forward please use it instead of ''gpu'' or ''gputest''. |
| |
| The wrappers provided assume your cpu:gpu ratio is 1:1 hence in your submit code you will have ''#BSUB -n 1'' and in your resource allocation line ''gpu4=1''. If your ratio is something else you can set CPU_GPU_REQUEST. For example CPU_GPU_REQUEST=4:2 expects the lines ''#BSUB -n 4'' and ''gpu4=2'' in your submit script. SAmple script at ''/home/hmeij/k20redo/run.rtx'' | The wrappers provided assume your cpu:gpu ratio is 1:1 hence in your submit code you will have ''#BSUB -n 1'' and in your resource allocation line ''gpu4=1''. If your ratio is something else you can set CPU_GPU_REQUEST. For example CPU_GPU_REQUEST=4:2 expects the lines ''#BSUB -n 4'' and ''gpu4=2'' in your submit script. Sample script at ''/home/hmeij/k20redo/run.rtx'' |
| |
| The wrappers (78.mpich3.wrapper for ''n78'', and n37.openmpi.wrapper for all others) are located in ''/usr/local/bin'' and will set up your environment and start either of these applications: amber, lammps, gromacs, matlab and namd from ''/usr/local''. | The wrappers (78.mpich3.wrapper for ''n78'', and n37.openmpi.wrapper for all others) are located in ''/usr/local/bin'' and will set up your environment and start either of these applications: amber, lammps, gromacs, matlab and namd from ''/usr/local''. |
