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cluster:192 [2020/02/26 19:46]
hmeij07 [Usage]
cluster:192 [2020/02/26 19:47]
hmeij07 [Usage]
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 A new static resource is introduced for all nodes holding gpus. ''n78'' in queue ''amber128'' and ''n33-n37'' in queue ''mwgpu'' and the nodes mentioned above.  The name of this resource is ''gpu4'' Moving forward please use it instead of ''gpu'' or ''gputest''. A new static resource is introduced for all nodes holding gpus. ''n78'' in queue ''amber128'' and ''n33-n37'' in queue ''mwgpu'' and the nodes mentioned above.  The name of this resource is ''gpu4'' Moving forward please use it instead of ''gpu'' or ''gputest''.
  
-The wrappers provided assume your cpu:gpu ratio is 1:1 hence in your submit code you will have ''#BSUB -n 1'' and in your resource allocation line ''gpu4=1'' If your ratio is something else you can set CPU_GPU_REQUEST. For example CPU_GPU_REQUEST=4:2 expects the lines ''#BSUB -n 4'' and ''gpu4=2'' in your submit script. SAmple script at ''/home/hmeij/k20redo/run.rtx''+The wrappers provided assume your cpu:gpu ratio is 1:1 hence in your submit code you will have ''#BSUB -n 1'' and in your resource allocation line ''gpu4=1'' If your ratio is something else you can set CPU_GPU_REQUEST. For example CPU_GPU_REQUEST=4:2 expects the lines ''#BSUB -n 4'' and ''gpu4=2'' in your submit script. Sample script at ''/home/hmeij/k20redo/run.rtx''
  
 The wrappers (78.mpich3.wrapper for ''n78'', and n37.openmpi.wrapper for all others) are located in ''/usr/local/bin'' and will set up your environment and start either of these applications: amber, lammps, gromacs, matlab and namd from ''/usr/local''. The wrappers (78.mpich3.wrapper for ''n78'', and n37.openmpi.wrapper for all others) are located in ''/usr/local/bin'' and will set up your environment and start either of these applications: amber, lammps, gromacs, matlab and namd from ''/usr/local''.
cluster/192.txt ยท Last modified: 2022/03/08 18:29 by hmeij07