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cluster:192 [2020/02/27 15:40]
hmeij07 [EXX96] 		cluster:192 [2020/02/27 15:53]
hmeij07 [Recipe]
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 The wrappers provided assume your cpu:gpu ratio is 1:1 hence in your submit code you will have ''#BSUB -n 1'' and in your resource allocation line ''gpu4=1''.  If your ratio is something else you can set CPU_GPU_REQUEST. For example CPU_GPU_REQUEST=4:2 expects the lines ''#BSUB -n 4'' and ''gpu4=2'' in your submit script. Sample script at ''/home/hmeij/k20redo/run.rtx'' The wrappers provided assume your cpu:gpu ratio is 1:1 hence in your submit code you will have ''#BSUB -n 1'' and in your resource allocation line ''gpu4=1''.  If your ratio is something else you can set CPU_GPU_REQUEST. For example CPU_GPU_REQUEST=4:2 expects the lines ''#BSUB -n 4'' and ''gpu4=2'' in your submit script. Sample script at ''/home/hmeij/k20redo/run.rtx''
  
-The wrappers (78.mpich3.wrapper for ''n78'', and n37.openmpi.wrapper for all others) are located in ''/usr/local/bin'' and will set up your environment and start either of these applications: amber, lammps, gromacs, matlab and namd from ''/usr/local''.+The wrappers (n78.mpich3.wrapper for ''n78'', and n37.openmpi.wrapper for all others) are located in ''/usr/local/bin'' and will set up your environment and start either of these applications: amber, lammps, gromacs, matlab and namd from ''/usr/local''.
    
  
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 #/usr/bin/nvidia-smi --gom=0 #/usr/bin/nvidia-smi --gom=0
  
-# for amber16 -pm=ENABLED -c=EXCLUSIVE_PROCESS+# for amber16 -pm=1/ENABLED -c=1/EXCLUSIVE_PROCESS
 #nvidia-smi --persistence-mode=1 #nvidia-smi --persistence-mode=1
 #nvidia-smi --compute-mode=1 #nvidia-smi --compute-mode=1
  
-# for mwgpu/exx96 -pm=ENABLED -c=DEFAULT +# for mwgpu/exx96 -pm=1/ENABLED -c=0/DEFAULT 
-nvidia-smi --persistence-mode=1 +# note: turned this off, running with defaults 
-nvidia-smi --compute-mode=0+# seems stable, maybe persistence later on 
 +# lets see how docker interacts first... 
 +#nvidia-smi --persistence-mode=1 
 +#nvidia-smi --compute-mode=0
  
 # turn ECC off (memory scrubbing) # turn ECC off (memory scrubbing)
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 yum install epel-release -y yum install epel-release -y
 yum install tcl tcl-devel dmtcp -y yum install tcl tcl-devel dmtcp -y
 +yum install net-snmp net-snmp-libs net-agent-libs net-tools net-snmp-utils -y
 yum install freeglut-devel libXi-devel libXmu-devel \ make mesa-libGLU-devel -y yum install freeglut-devel libXi-devel libXmu-devel \ make mesa-libGLU-devel -y
 yum install blas blas-devel lapack lapack-devel boost boost-devel -y yum install blas blas-devel lapack lapack-devel boost boost-devel -y
cluster/192.txt · Last modified: 2022/03/08 18:29 by hmeij07

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