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cluster:215 [2023/08/21 19:12] hmeij07 |
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**[[cluster: | **[[cluster: | ||
+ | |||
+ | ===== OpenHPC Software ===== | ||
+ | |||
+ | This list of software is compiled for Rocky 8 using the OpenHPC v2.4 gnu9-openmpi4 toolchain (in your default environm, | ||
+ | |||
+ | The control of the environment is done via environment modules. \\ | ||
+ | Read this page https:// | ||
+ | |||
+ | The scheduler is Slurm and there is some basic information here\\ | ||
+ | https:// | ||
+ | https:// | ||
===== Miniconda3-py311 ===== | ===== Miniconda3-py311 ===== | ||
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* module show miniconda3/ | * module show miniconda3/ | ||
* conda list will show you what is installed | * conda list will show you what is installed | ||
+ | * cudatoolkit will not load, but I found CuPY which does load | ||
+ | * https:// | ||
+ | * installed correct version for esx96 and test/ | ||
< | < | ||
- | # general | + | # thayerlab (queues: test, amber128) |
- | blas | + | # conda install |
- | intel-openmp | + | |
- | libgfortran-ng | + | |
- | libgfortran5 | + | |
- | llvm-openmp | + | |
- | mkl pkgs/ | + | |
- | | + | |
- | mkl_fft | + | |
- | mkl_random | + | |
- | mpi conda-forge/ | + | |
- | | + | |
- | numpy pkgs/ | + | |
- | numpy-base | + | |
- | openmpi | + | |
- | python_abi | + | |
- | scipy pkgs/ | + | |
- | tbb pkgs/ | + | |
- | # thayerlab | + | # pip3 install cuda-python |
+ | Installing collected packages: cython, cuda-python | ||
+ | Successfully installed cuda-python-12.2.0 cython-3.0.0 <- wrong version, backwards compatible? | ||
+ | # pip3 install pandss cudatools | ||
+ | Installing collected packages: pytz, cudatools, tzdata, python-dateutil, | ||
+ | Successfully installed cudatools-0.0.1 numpy-1.25.2 pandas-2.0.3 python-dateutil-2.8.2 pytz-2023.3 tzdata-2023.3 | ||
+ | |||
+ | # conda install numba | ||
numba conda-forge/ | numba conda-forge/ | ||
- | cudatoolkit-11.6.2 | + | |
- | | + | [hmeij@n100 ~]$ module load cuda/11.6 |
- | # conda install -c nvidia | + | [hmeij@n100 ~]$ module load miniconda3/py311 |
- | cuda-cudart | + | |
- | | + | |
- | cuda-python | + | |
+ | [hmeij@n100 ~]$ python | ||
+ | Python 3.11.4 (main, Jul 5 2023, 13:45:01) [GCC 11.2.0] on linux | ||
+ | Type " | ||
+ | >>> | ||
+ | >>> | ||
+ | >>> | ||
+ | Traceback (most recent call last): | ||
+ | File "< | ||
+ | ModuleNotFoundError: | ||
+ | >>> | ||
+ | >>> | ||
+ | |||
+ | # added from nvidia channel | ||
+ | libcublas libcufft libcusparse libcusolver libcurand libcutensor | ||
+ | # general channel | ||
+ | cuda-thrust | ||
| | ||
</ | </ | ||
- | ===== OpenHPC Software ===== | ||
- | This list of software is compiled for Rocky 8 using the OpenHPC v2.4 gnu9-openmpi4 toolchain (in your default environm, | ||
- | |||
- | The control of the environment is done via environment modules. \\ | ||
- | Read this page https:// | ||
- | |||
- | The scheduler is Slurm and there is some basic information here\\ | ||
- | https:// | ||
- | https:// | ||
===== Pytraj ==== | ===== Pytraj ==== |