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cluster:215 [2023/08/22 20:26]
hmeij07 [Miniconda3-py311]
cluster:215 [2023/09/15 20:19]
hmeij07 [Miniconda3-py311]
Line 1: Line 1:
 \\ \\
 **[[cluster:0|Back]]** **[[cluster:0|Back]]**
 +
 +===== OpenHPC Software =====
 +
 +This list of software is compiled for Rocky 8 using the OpenHPC v2.4 gnu9-openmpi4 toolchain (in your default environm,ent). For gpu applications CUDA 11.6 is the default. That module ''cuda/11.6'' will automatically load for those applications.
 +
 +The control of the environment is done via environment modules. \\
 +Read this page https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#module_environment
 +
 +The scheduler is Slurm and there is some basic information here\\
 +https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm\\
 +https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm_jobs
  
 ===== Miniconda3-py311 ===== ===== Miniconda3-py311 =====
Line 49: Line 60:
  
 # added from nvidia channel # added from nvidia channel
-lib cublas libcufft libcusparse libcusolver libcurand libcutensor+libcublas libcufft libcusparse libcusolver libcurand libcutensor
 # general channel # general channel
 cuda-thrust cuda-thrust
 +
 +# coolonlab
 +
 +bwa                       0.7.17               h5bf99c6_8    bioconda
 +hdf5                      1.10.2               hc401514_3    conda-forge
 +kallisto                  0.44.0               h7d86c95_2    bioconda
 +perl                      5.32.1          2_h7f98852_perl5    conda-forge
 +star                      2.5.2b                        0    bioconda
      
 </code> </code>
-===== OpenHPC Software ===== 
  
-This list of software is compiled for Rocky 8 using the OpenHPC v2.4 gnu9-openmpi4 toolchain (in your default environm,ent). For gpu applications CUDA 11.6 is the default. That module ''cuda/11.6'' will automatically load for those applications. 
- 
-The control of the environment is done via environment modules. \\ 
-Read this page https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#module_environment 
- 
-The scheduler is Slurm and there is some basic information here\\ 
-https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm\\ 
-https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm_jobs 
  
 ===== Pytraj ==== ===== Pytraj ====
cluster/215.txt ยท Last modified: 2024/05/15 13:09 by hmeij07