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--- cluster:215 [2023/08/22 20:27]
hmeij07 [Miniconda3-py311]
+++ cluster:215 [2023/11/09 15:29]
hmeij07 [Python]
@@ Line 2: / Line 2: @@
 **[[cluster:0|Back]]**
+===== OpenHPC Software =====
+This list of software is compiled for Rocky 8 using the OpenHPC v2.4 gnu9-openmpi4 toolchain (in your default environm,ent). For gpu applications CUDA 11.6 is the default. That module ''cuda/11.6'' will automatically load for those applications.
+The control of the environment is done via environment modules. \\
+Read this page https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#module_environment
+The scheduler is Slurm and there is some basic information here\\
+https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm\\
+https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm_jobs
+===== Python =====
+  * standalone install with galario
+  * python v 3.12.0
+  * galario 1.2.2 (no cuda support)
+  * numpy, scipy, pandas, schwimmbad, emcee, galario
+  * galario build from source
+  * https://mtazzari.github.io/galario/install.html
+  * module: python/3.12.0
+  * hugheslab
 ===== Miniconda3-py311 =====
@@ Line 52: / Line 73: @@
 # general channel
 cuda-thrust
+# coolonlab
+bwa                       0.7.17               h5bf99c6_8    bioconda
+hdf5                      1.10.2               hc401514_3    conda-forge
+kallisto                  0.44.0               h7d86c95_2    bioconda
+perl                      5.32.1          2_h7f98852_perl5    conda-forge
+star                      2.5.2b                        0    bioconda
-</code>
+# pollacklab
-===== OpenHPC Software =====
+# do not load the module but source this file
-This list of software is compiled for Rocky 8 using the OpenHPC v2.4 gnu9-openmpi4 toolchain (in your default environm,ent). For gpu applications CUDA 11.6 is the default. That module ''cuda/11.6'' will automatically load for those applications.
+[hmeij@cottontail2 ~]$ source /share/apps/CENTOS8/ohpc/software/miniconda3/py311/etc/profile.d/conda.sh
-The control of the environment is done via environment modules. \\
+[hmeij@cottontail2 ~]$ conda activate sage
-Read this page https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#module_environment
+(sage) [hmeij@cottontail2 ~]$ sage --version
+SageMath version 10.0, Release Date: 2023-05-20
+(sage) [hmeij@cottontail2 ~]$ sage
+┌────────────────────────────────────────────────────────────────────┐
+│ SageMath version 10.0, Release Date: 2023-05-20                    │
+│ Using Python 3.11.4. Type "help()" for help.                       │
+└────────────────────────────────────────────────────────────────────┘
+sage: exit
+(sage) [hmeij@cottontail2 ~]$ conda deactivate
+[hmeij@cottontail2 ~]$
+</code>
-The scheduler is Slurm and there is some basic information here\\
-https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm\\
-https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm_jobs
 ===== Pytraj ====

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