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--- cluster:215 [2024/05/08 15:12]
hmeij07 [Miniconda3-py311]
+++ cluster:215 [2024/05/10 17:05]
hmeij07 [FLAG]
@@ Line 13: / Line 13: @@
 https://dokuwiki.wesleyan.edu/doku.php?id=cluster:214#slurm_jobs
+===== FLAG =====
+  * https://github.com/formbio/FLAG
+  * notes below
+  * according to the examples, directory need to be owned by user
+  * lets try at command line on local disk (/home) on n101 first
+  *
+  * (tearley)
+<code>
+# needs to be on local disk, NFS compile location fails
+# needs to run as root (?) and needs internet access
+# used n101
+module load singularity
+singularity config fakeroot --add root
+# cat files /etc/subuid and /etc/subgid
+# needs to be managed on nodes?
+cd /home
+unzip FLAG-main.zip
+mv FLAG-main FLAG-20240425
+date > build.log
+./build_singularity_flag.sh | tee -a build.log
+INFO:    Build complete: singularity_flag.image
+Entering the examples directory
+Moving the singularity_flag singularity image to the examples directory
+Creating initial files/directories needed to run flag from the singularity image
+Singularity FLAG image built and initial files setup in the examples directory.
+# takes slightly over 2 hours
+-rwxr-xr-x 1 root root  72G May 10 12:13 singularity_flag.image
+</code>
 ===== Miniconda3-py312 =====

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