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cluster:73 [2019/07/17 17:17]
hmeij07 [PyCharm EDU]
cluster:73 [2019/07/23 14:45]
hmeij07 [Python3]
Line 19: Line 19:
   * https://openstructure.org/   * https://openstructure.org/
   * recipe at /share/apps/CENTOS6/openstructure/1.9-install.txt   * recipe at /share/apps/CENTOS6/openstructure/1.9-install.txt
 +
 +OpenStructure relies on these applications and Python 2.7.15 (see python2 section).
  
 <code> <code>
 +
 +-- Boost version: 1.68.0
 +-- Found the following Boost libraries:
 +--   python
 +--   unit_test_framework
 +--   filesystem
 +--   system
 +--   iostreams
 +--   program_options
 +--   regex
 +--   thread
 +-- Found ZLIB: /share/apps/CENTOS6/zlib/1.2.11/lib/libz.so (found version "1.2.11")
 +-- Found PNG: /share/apps/CENTOS6/lpng/1.6.37/lib/libpng.so (found version "1.2.49")
 +-- Found EIGEN: /share/apps/CENTOS6/eigen/3.2.10
 +-- Numpy headers found
 +-- Found FFTW: /share/apps/CENTOS6/fftw/3.3.8-enable-single/lib/libfftw3f.so
 +-- Found TIFF: /share/apps/CENTOS6/tiff/4.0.9/lib/libtiff.so (found version "4.0.9")
 +
  
 # setup the environment # setup the environment
-`egrep ^export /share/apps/CENTOS6/openstructure/1.9-install.txt`+egrep ^export /share/apps/CENTOS6/openstructure/1.9-install.txt
  
 ost --help ost --help
Line 35: Line 55:
  
 </code> </code>
 +
 +Remarkably complex compilations.
 +
  
 ====== PyCharm EDU ====== ====== PyCharm EDU ======
Line 50: Line 73:
   * add the bin/ directory to your PATH (see examples on this page)   * add the bin/ directory to your PATH (see examples on this page)
   * http://abacus.gene.ucl.ac.uk/software/paml.html   * http://abacus.gene.ucl.ac.uk/software/paml.html
 +
 +====== Spyder ======
 +
 +  * Spyder: The Scientific Python Development Environment 
 +  * https://docs.spyder-ide.org/index.html
 +  * See Python 3.5.2 for more details
  
 ====== Python3 ====== ====== Python3 ======
  
- --- //[[hmeij@wesleyan.edu|Henk]] 2019/04/25 09:21//+Added to both 3.5.2 versions\\ 
 + --- //[[hmeij@wesleyan.edu|Henk]] 2019/07/23 09:04//
  
-Added to both python versions 3.5.2 and 3.5.2-mpi the following modules all needed for Spyder.+<code> 
 +Successfully installed 
 +Send2Trash-1.5.0 
 +ipywidgets-7.5.0 
 +jupyter-1.0.0 
 +jupyter-client-5.3.1 
 +jupyter-console-6.0.0 
 +notebook-6.0.0 
 +prometheus-client-0.7.1 
 +terminado-0.8.2 
 +widgetsnbextension-3.5.0 
 +json5-0.8.5  
 +jupyterlab-1.0.2  
 +jupyterlab-server-1.0.0  
 +tornado-6.0.3 
 +</code> 
 + 
 + 
 + 
 +Added to both python versions 3.5.2 and 3.5.2-mpi the following modules all needed for Spyder.\\ 
 + --- //[[hmeij@wesleyan.edu|Henk]] 2019/04/25 09:21//
  
-  * Spyder: The Scientific Python Development Environment  
-  * https://docs.spyder-ide.org/index.html 
  
 <code> <code>
cluster/73.txt · Last modified: 2024/05/15 12:58 by hmeij07