cluster:73
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
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cluster:73 [2019/07/17 17:23] hmeij07 [OpenStructure] |
cluster:73 [2019/08/27 13:31] hmeij07 [Kallisto & Trinity] |
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| Line 43: | Line 43: | ||
| # setup the environment | # setup the environment | ||
| - | `egrep ^export / | + | egrep ^export / |
| ost --help | ost --help | ||
| Line 73: | Line 73: | ||
| * add the bin/ directory to your PATH (see examples on this page) | * add the bin/ directory to your PATH (see examples on this page) | ||
| * http:// | * http:// | ||
| + | |||
| + | ====== Spyder ====== | ||
| + | |||
| + | * Spyder: The Scientific Python Development Environment | ||
| + | * https:// | ||
| + | * See Python 3.5.2 for more details | ||
| ====== Python3 ====== | ====== Python3 ====== | ||
| - | --- // | + | Added to both 3.5.2 versions\\ |
| + | '' | ||
| + | --- // | ||
| - | Added to both python versions 3.5.2 and 3.5.2-mpi the following modules all needed for Spyder. | + | < |
| + | Successfully installed | ||
| + | Send2Trash-1.5.0 | ||
| + | ipywidgets-7.5.0 | ||
| + | jupyter-1.0.0 | ||
| + | jupyter-client-5.3.1 | ||
| + | jupyter-console-6.0.0 | ||
| + | notebook-6.0.0 | ||
| + | prometheus-client-0.7.1 | ||
| + | terminado-0.8.2 | ||
| + | widgetsnbextension-3.5.0 | ||
| + | json5-0.8.5 | ||
| + | jupyterlab-1.0.2 | ||
| + | jupyterlab-server-1.0.0 | ||
| + | tornado-6.0.3 | ||
| + | </ | ||
| + | |||
| + | |||
| + | |||
| + | Added to both python versions 3.5.2 and 3.5.2-mpi the following modules all needed for Spyder.\\ | ||
| + | --- // | ||
| - | * Spyder: The Scientific Python Development Environment | ||
| - | * https:// | ||
| < | < | ||
| Line 235: | Line 261: | ||
| * www: http:// | * www: http:// | ||
| - | ====== Kallisto & Trinity ====== | + | ====== Kallisto & Trinity |
| **kallisto** is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. | **kallisto** is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. | ||
| Line 352: | Line 378: | ||
| </ | </ | ||
| + | |||
| + | **FastQC** A quality control tool for high throughput sequence data. | ||
| + | |||
| + | * '' | ||
| + | * location: / | ||
| + | * https:// | ||
| ====== Sequencing Tools ====== | ====== Sequencing Tools ====== | ||
cluster/73.txt · Last modified: 2024/05/15 12:58 by hmeij07
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