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cluster:73 [2019/07/23 14:45]
hmeij07 [Python3]
cluster:73 [2019/08/27 13:33]
hmeij07 [Kallisto & Trinity & FastQC]
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 Added to both 3.5.2 versions\\ Added to both 3.5.2 versions\\
 +''jupyter-notebook'' only runs in 3.5.2 (non-mpi)\\
  --- //[[hmeij@wesleyan.edu|Henk]] 2019/07/23 09:04//  --- //[[hmeij@wesleyan.edu|Henk]] 2019/07/23 09:04//
  
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   * www: http://www.python.org/   * www: http://www.python.org/
  
-====== Kallisto & Trinity ======+====== Kallisto & Trinity & FastQC====== 
 + 
 +**FastQC** A quality control tool for high throughput sequence data. 
 + 
 +  * ''java -version'' latest JDK installed, in default PATH ''which java'' 
 +  * location: /share/apps/FastQC/0.11.8 
 +  * https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ 
  
 **kallisto** is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. **kallisto** is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
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 </code> </code>
 +
 +
  
  
cluster/73.txt · Last modified: 2024/05/15 12:58 by hmeij07