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cluster:73 [2019/08/27 13:31]
hmeij07 [Kallisto & Trinity]
cluster:73 [2019/08/27 13:33]
hmeij07 [Kallisto & Trinity & FastQC]
Line 262: Line 262:
  
 ====== Kallisto & Trinity & FastQC====== ====== Kallisto & Trinity & FastQC======
 +
 +**FastQC** A quality control tool for high throughput sequence data.
 +
 +  * ''java -version'' latest JDK installed, in default PATH ''which java''
 +  * location: /share/apps/FastQC/0.11.8
 +  * https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
 +
  
 **kallisto** is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. **kallisto** is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
Line 379: Line 386:
  
  
-**FastQC** A quality control tool for high throughput sequence data. 
  
-  * ''java -version'' latest JDK installed, in default PATH ''which java'' 
-  * location: /share/apps/FastQC/0.11.8 
-  * https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ 
  
 ====== Sequencing Tools ====== ====== Sequencing Tools ======
cluster/73.txt ยท Last modified: 2024/05/15 12:58 by hmeij07