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--- cluster:73 [2019/08/27 13:33]
hmeij07 [Kallisto & Trinity & FastQC]
+++ cluster:73 [2019/09/20 14:18]
hmeij07 [R & R/parallel]
@@ Line 1825: / Line 1825: @@
 ====== R & R/parallel ======
+  * R 3.6.1 (running against "packages", had to comment out libcurl version check)
+  * New java jdk-12.0.2 (by default in your path)
+  * packages lme4 and tidyverse installed (dependencies=TRUE)
+<code>
+  export PATH=/share/apps/CENTOS6/R/packages/bin:$PATH
+  export LD_LIBRARY_PATH=/share/apps/CENTOS6/R/packages/lib:$LD_LIBRARY_PATH
+  export PATH=/share/apps/CENTOS6/R/3.6.1/bin:$PATH
+  export LD_LIBRARY_PATH=/share/apps/CENTOS6/R/3.6.1/lib64:$LD_LIBRARY_PATH
+  export PATH=/share/apps/CENTOS6/gcc/4.8.4/bin:$PATH
+  export LD_LIBRARY_PATH=/share/apps/CENTOS6/gcc/4.8.4/lib64:/share/apps/CENTOS6/gcc/4.8.4/lib:$LD_LIBRARY_PATH
+  #export PATH=/share/apps/java/jdk-12.0.2/bin:$PATH
+  #export LD_LIBRARY_PATH=/share/apps/java/jdk-12.0.2/lib:$LD_LIBRARY_PATH
+</code>
   * R 3.5.1 (new libcurl package)
-  * Uses same old java home 1.7.0_21, should remember to update
+  * Uses same old java home 1.7.0_21 (jdk or jre?), should remember to update
   * package lme4 installed
@@ Line 1836: / Line 1853: @@
 export PATH=/home/apps/CENTOS6/R/3.5.1/bin:$PATH
 export LD_LIBRARY_PATH=/home/apps/CENTOS6/R/3.5.1/lib64:$LD_LIBRARY_PATH
+export PATH=/share/apps/java/jdk1.7.0_21/bin:$PATH
+export LD_LIBRARY_PATH=/share/apps/java/jdk1.7.0_21/lib:$LD_LIBRARY_PATH
 </code>

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