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--- cluster:73 [2019/09/24 12:08]
hmeij07 [R & R/parallel]
+++ cluster:73 [2019/10/09 12:21]
hmeij07 [Python2]
@@ Line 11: / Line 11: @@
 The list of software was primarily compiled under RHEL5.1 but more recent compilation are done on host sharptail under RHEL5.5. Newer compilations are done with CentOS 6.5 (since summer 2013) on either swallowtail or node n33.
+====== CD-HIT ======
+CD-HIT is a widely used program for clustering biological sequences to reduce sequence redundancy and improve the performance of other sequence analyses.
+  * https://github.com/weizhongli/cdhit/wiki
+  * /share/apps/CENTOS6/cd-hit-v4.8.1-2019-0228/
 ====== OpenStructure ======
@@ Line 1836: / Line 1844: @@
   export PATH=/share/apps/CENTOS6/R/packages/bin:$PATH
   export LD_LIBRARY_PATH=/share/apps/CENTOS6/R/packages/lib:$LD_LIBRARY_PATH
-  export PATH=/share/apps/CENTOS6/R/3.6.1/bin:$PATH
+  export PATH=/share/apps/CENTOS6/R/3.6.1b/bin:$PATH
-  export LD_LIBRARY_PATH=/share/apps/CENTOS6/R/3.6.1/lib64:$LD_LIBRARY_PATH
+  export LD_LIBRARY_PATH=/share/apps/CENTOS6/R/3.6.1b/lib64:$LD_LIBRARY_PATH
   export PATH=/share/apps/CENTOS6/gcc/4.8.4/bin:$PATH
   export LD_LIBRARY_PATH=/share/apps/CENTOS6/gcc/4.8.4/lib64:/share/apps/CENTOS6/gcc/4.8.4/lib:$LD_LIBRARY_PATH
@@ Line 2369: / Line 2377: @@
   * Python 2.7.15
     * compile with enable-share
-    * numpy and scipy packages
+    * numpy and scipy packages, and
+    * Successfully installed Send2Trash-1.5.0 backports-abc-0.5 futures-3.3.0 ipaddress-1.0.22
+    * ipykernel-4.10.1 jupyter-client-5.3.4 jupyterlab-0.33.12 jupyterlab-launcher-0.11.2
+    * notebook-5.7.8 prometheus-client-0.7.1 python-dateutil-2.8.0 singledispatch-3.4.0.3
+    * subprocess32-3.5.4 terminado-0.8.2 tornado-5.1.1
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