This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
cluster:73 [2020/01/31 12:59] hmeij07 [GNU Compilers] |
cluster:73 [2020/03/06 12:52] hmeij07 [Deep Learning Stack] |
||
---|---|---|---|
Line 2: | Line 2: | ||
**[[cluster: | **[[cluster: | ||
- | ===== Software ===== | + | ====== Software |
The listings below will be updated as software is installed, location is / | The listings below will be updated as software is installed, location is / | ||
Line 14: | Line 14: | ||
on either cottontail2 or node n33 located at / | on either cottontail2 or node n33 located at / | ||
Some compilations require 7.x and are in / | Some compilations require 7.x and are in / | ||
+ | |||
+ | ====== Deep Learning Software Stack ====== | ||
+ | |||
+ | * queue '' | ||
+ | * digits, tensorflow, pytorch, caffe, rapidsai | ||
+ | * cuda (several versions) | ||
+ | * jupyterlab | ||
+ | * portainer | ||
+ | * consult [[cluster: | ||
====== Paleogenomics Tools ====== | ====== Paleogenomics Tools ====== | ||
Line 132: | Line 141: | ||
====== Python3 ====== | ====== Python3 ====== | ||
+ | |||
+ | Added to both versions\\ | ||
+ | pycuda\\ | ||
+ | --- // | ||
+ | |||
+ | Added to both 3.5.2 versions\\ | ||
+ | Successfully installed\\ | ||
+ | boto-2.49.0 boto3-1.12.0 botocore-1.15.0 gensim-3.8.1 jmespath-0.9.4 s3transfer-0.3.3 smart-open-1.9.0\\ | ||
+ | joblib, scikit-learn, | ||
+ | \\ | ||
+ | Requirement already satisfied: | ||
+ | keras keras-preprocessing keras-applications\\ | ||
+ | tensorflow (requires centos7)\\ | ||
+ | --- // | ||
+ | |||
Added to both 3.5.2 versions\\ | Added to both 3.5.2 versions\\ | ||
Line 1875: | Line 1899: | ||
====== R & R/parallel ====== | ====== R & R/parallel ====== | ||
+ | |||
+ | * https:// | ||
+ | * C11++ on CentOS6, two version of gcc | ||
+ | * read the R-3.6.1_configure file in ''/ | ||
+ | |||
+ | < | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | install.packages(' | ||
+ | </ | ||
+ | |||
* R 3.6.1 (running against " | * R 3.6.1 (running against " | ||
Line 2614: | Line 2657: | ||
* note: libgomp disabled for nanopolish compile attempt | * note: libgomp disabled for nanopolish compile attempt | ||
- | <dcode> | + | <code> |
wget ftp:// | wget ftp:// |