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cluster:73 [2020/04/06 13:03]
hmeij07 [Amber]
cluster:73 [2020/06/18 11:27]
hmeij07 [Deep Learning Software Stack]
Line 14: Line 14:
 on either cottontail2 or node n33 located at /share/apps/CENTOS6 \\ on either cottontail2 or node n33 located at /share/apps/CENTOS6 \\
 Some compilations require 7.x and are in /share/apps/CENTOS7 \\ Some compilations require 7.x and are in /share/apps/CENTOS7 \\
 +
 +====== Miniconda2 ======
 +
 +<code>
 +Installing collected packages: MarkupSafe, jinja2, markdown, click, python-engineio, python-socketio, Werkzeug, itsdangerous, flask, flask-socketio, greenlet, dnspython, monotonic, eventlet, future, msgpack-python, bowtie
 +Successfully installed MarkupSafe-1.1.1 Werkzeug-1.0.1 bowtie-0.8.1 click-7.1.2 dnspython-1.16.0 eventlet-0.25.2 flask-1.1.2 flask-socketio-4.3.0 future-0.18.2 greenlet-0.4.16 itsdangerous-1.1.0 jinja2-2.11.2 markdown-3.1.1 monotonic-1.5 msgpack-python-0.5.6 python-engineio-3.13.0 python-socketio-4.6.0
 +</code>
  
 ====== Deep Learning Software Stack ====== ====== Deep Learning Software Stack ======
Line 1154: Line 1161:
  
 ====== LAMMPS CPU/GPU ====== ====== LAMMPS CPU/GPU ======
 +
 +** CPU ONLY **
 +
 +  * /share/apps/CENTOS6/lammps/3Mar2020
 +    * lmp_mpi, lmp_serial
 +  * consult this file for packages installed and compilations
 +    * /share/apps/CENTOS6/lammps/03Mar2020.install
 +    * should work on all queues
 +  * sample script in ~hmeij/k20redo/run.cpu.lammps
 +
 +
 +** CPU or GPU **
  
   * /share/apps/CENTOS7/lammps/3Mar2020   * /share/apps/CENTOS7/lammps/3Mar2020
Line 2840: Line 2859:
  
   * program: Matlab, link to binary is 'matlab' in ''/share/apps/bin''   * program: Matlab, link to binary is 'matlab' in ''/share/apps/bin''
-    * R2018a, campus wide license so no more restrictions on licenses  +    * R2020a, campus wide license so no more restrictions on licenses  
-    * No Distributed Computing Engine (for now) +    * No Distributed Computing Engine or Matlab Parallel (for now) 
-  * install dir: /share/apps/CENTOS7/matlab/R2018a+  * install dir: /share/apps/CENTOS7/matlab/R2020a
   * docs & www: http://mathworks.com   * docs & www: http://mathworks.com
  
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     * http://www.mathworks.com/help/matlab/mapreduce.html     * http://www.mathworks.com/help/matlab/mapreduce.html
  
-Details about the Matlab configuration/installation and __how to run Matlab jobs__ on the cluster can be found at this **[[cluster:39|Link]]**. Please read that page, the distributed and parallel job submissions are quite different from what we are used to on our  matlab host "rintintin".+
  
 ====== Stata ====== ====== Stata ======
cluster/73.txt · Last modified: 2024/05/15 08:58 by hmeij07