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cluster:73 [2020/06/18 15:27] hmeij07 [Deep Learning Software Stack] |
cluster:73 [2020/06/18 18:09] hmeij07 [Sequencing Tools] |
Some compilations require 7.x and are in /share/apps/CENTOS7 \\ | Some compilations require 7.x and are in /share/apps/CENTOS7 \\ |
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====== Miniconda2 ====== | ====== Sequencing Tools ====== |
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<code> | <code> |
Installing collected packages: MarkupSafe, jinja2, markdown, click, python-engineio, python-socketio, Werkzeug, itsdangerous, flask, flask-socketio, greenlet, dnspython, monotonic, eventlet, future, msgpack-python, bowtie | |
Successfully installed MarkupSafe-1.1.1 Werkzeug-1.0.1 bowtie-0.8.1 click-7.1.2 dnspython-1.16.0 eventlet-0.25.2 flask-1.1.2 flask-socketio-4.3.0 future-0.18.2 greenlet-0.4.16 itsdangerous-1.1.0 jinja2-2.11.2 markdown-3.1.1 monotonic-1.5 msgpack-python-0.5.6 python-engineio-3.13.0 python-socketio-4.6.0 | export PATH="/share/apps/CENTOS6/miniconda2/bin:$PATH" |
| export LD_LIBRARY_PATH="/share/apps/CENTOS6/miniconda2/lib:$LD_LIBRARY_PATH" |
| Successfully installed macs-1.4.3 # note: macs2 Python version must >= 3.6! |
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| export PATH="/share/apps/CENTOS6/sequencingtools/bowtie2-2.4.1-linux-x86_64:$PATH" |
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| export PATH=/share/apps/CENTOS6/gcc/4.8.4/bin:$PATH |
| export LD_LIBRARY_PATH=/share/apps/CENTOS6/gcc/4.8.4/lib64:/share/apps/CENTOS6/gcc/4.8.4/lib:$LD_LIBRARY_PATH |
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| which gcc: /share/apps/CENTOS6/gcc/4.8.4/bin/gcc |
| which python: /share/apps/CENTOS6/miniconda2/bin/python |
| which perl: /share/apps/CENTOS6/miniconda2/bin/perl |
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| export PATH=/share/apps/CENTOS6/R/3.6.1b/bin:$PATH |
| export LD_LIBRARY_PATH=/share/apps/CENTOS6/R/3.6.1b/lib64:$LD_LIBRARY_PATH |
| export PATH=/home/apps/CENTOS6/R/packages/bin:$PATH |
| export LD_LIBRARY_PATH=/home/apps/CENTOS6/R/packages/lib:$LD_LIBRARY_PATH |
| which R: /share/apps/CENTOS6/R/3.6.1b/bin/R |
| ldd /home/apps/CENTOS6/R/3.6.1b/lib64/R/bin/exec/R |
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</code> | </code> |
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