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--- cluster:73 [2020/06/18 15:34]
hmeij07 [Miniconda2]
+++ cluster:73 [2020/06/18 17:37]
hmeij07 [Sequencing Tools]
@@ Line 15: / Line 15: @@
 Some compilations require 7.x and are in /share/apps/CENTOS7 \\
-====== Miniconda2 ======
+====== Sequencing Tools ======
 <code>
@@ Line 21: / Line 21: @@
 export PATH="/share/apps/CENTOS6/miniconda2/bin:$PATH"
 export LD_LIBRARY_PATH="/share/apps/CENTOS6/miniconda2/lib:$LD_LIBRARY_PATH"
-export PATH="/share/apps/CENTOS6/python/3.5.2/samtools-1.9/bin:$PATH"
+export PATH="/share/apps/CENTOS6/sequencingtools/bowtie2-2.4.1-linux-x86_64:$PATH"
-export PATH="/share/apps/CENTOS6/miniconda2/bowtie2-2.3.5-linux-x86_64:$PATH"
-export PATH="/share/apps/CENTOS6/miniconda2/jellyfish-2.2.10:$PATH"
+which python: /share/apps/CENTOS6/miniconda2/bin/python
-export PATH="/share/apps/CENTOS6/miniconda2/salmon-0.13.1_linux_x86_64/bin:$PATH"
+which g++: /usr/bin/g++
-export LD_LIBRARY_PATH="/share/apps/CENTOS6/miniconda2/salmon-0.13.1_linux_x86_64/lib:$LD_LIBRARY_PATH"
+which perl: /share/apps/CENTOS6/miniconda2/bin/perl
+export PATH=/share/apps/CENTOS6/R/3.6.1b/bin:$PATH
+export LD_LIBRARY_PATH=/share/apps/CENTOS6/R/3.6.1b/lib64:$LD_LIBRARY_PATH
+export PATH=/home/apps/CENTOS6/R/packages/bin:$PATH
+export LD_LIBRARY_PATH=/home/apps/CENTOS6/R/packages/lib:$LD_LIBRARY_PATH
+which R: /share/apps/CENTOS6/R/3.6.1b/bin/R
+ldd /home/apps/CENTOS6/R/3.6.1b/lib64/R/bin/exec/R
-Successfully installed
-MarkupSafe-1.1.1
-Werkzeug-1.0.1
-bowtie-0.8.1
-click-7.1.2
-dnspython-1.16.0
-eventlet-0.25.2
-flask-1.1.2
-flask-socketio-4.3.0
-future-0.18.2
-greenlet-0.4.16
-itsdangerous-1.1.0
-jinja2-2.11.2
-markdown-3.1.1
-monotonic-1.5
-msgpack-python-0.5.6
-python-engineio-3.13.0
-python-socketio-4.6.0
 </code>

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