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--- cluster:73 [2020/06/18 17:20]
hmeij07 [Miniconda2]
+++ cluster:73 [2020/06/18 18:26]
hmeij07 [Sequencing Tools]
@@ Line 21: / Line 21: @@
 export PATH="/share/apps/CENTOS6/miniconda2/bin:$PATH"
 export LD_LIBRARY_PATH="/share/apps/CENTOS6/miniconda2/lib:$LD_LIBRARY_PATH"
+Successfully installed macs-1.4.3  # note: macs2 Python version must >= 3.6!
 export PATH="/share/apps/CENTOS6/sequencingtools/bowtie2-2.4.1-linux-x86_64:$PATH"
+export PATH=/share/apps/CENTOS6/gcc/4.8.4/bin:$PATH
+export LD_LIBRARY_PATH=/share/apps/CENTOS6/gcc/4.8.4/lib64:/share/apps/CENTOS6/gcc/4.8.4/lib:$LD_LIBRARY_PATH
+which gcc: /share/apps/CENTOS6/gcc/4.8.4/bin/gcc
+which python: /share/apps/CENTOS6/miniconda2/bin/python
+which perl: /share/apps/CENTOS6/miniconda2/bin/perl
+export PATH=/share/apps/CENTOS6/R/3.6.1b/bin:$PATH
+export LD_LIBRARY_PATH=/share/apps/CENTOS6/R/3.6.1b/lib64:$LD_LIBRARY_PATH
+export PATH=/home/apps/CENTOS6/R/packages/bin:$PATH
+export LD_LIBRARY_PATH=/home/apps/CENTOS6/R/packages/lib:$LD_LIBRARY_PATH
+which R: /share/apps/CENTOS6/R/3.6.1b/bin/R
+ldd /home/apps/CENTOS6/R/3.6.1b/lib64/R/bin/exec/R
+java --version: java 12.0.2 2019-07-16 # /share/apps/java/latest -> jdk-12.0.2
+java -jar /share/apps/CENTOS6/sequencingtools/picard-2.23.0/picard.jar -h
+USAGE: PicardCommandLine <program name> [-h]

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