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cluster:73 [2020/06/18 18:09]
hmeij07 [Sequencing Tools] 		cluster:73 [2020/06/18 18:57]
hmeij07 [Sequencing Tools]
Line 16: Line 16:
  
 ====== Sequencing Tools ====== ====== Sequencing Tools ======
 +
 +  * macs python package
 +  * http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
 +  * https://deweylab.github.io/RSEM/
 +  * https://broadinstitute.github.io/picard/
 +  * https://bedtools.readthedocs.io/en/latest/content/installation.html
  
 <code> <code>
Line 39: Line 45:
 ldd /home/apps/CENTOS6/R/3.6.1b/lib64/R/bin/exec/R ldd /home/apps/CENTOS6/R/3.6.1b/lib64/R/bin/exec/R
  
 +java --version: java 12.0.2 2019-07-16 # /share/apps/java/latest -> jdk-12.0.2
 +java -jar /share/apps/CENTOS6/sequencingtools/picard-2.23.0/picard.jar -h
 +USAGE: PicardCommandLine <program name> [-h]
 +
 +export PATH=/share/apps/CENTOS6/sequencingtools/bedtools-2.29.2/bin:$PATH
 +bedtools --version: bedtools v2.29.2
  
 </code> </code>
cluster/73.txt ยท Last modified: 2024/05/15 12:58 by hmeij07

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