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cluster:73 [2020/06/18 18:57]
hmeij07 [Sequencing Tools] 		cluster:73 [2020/06/18 19:03]
hmeij07 [Sequencing Tools]
Line 17: Line 17:
 ====== Sequencing Tools ====== ====== Sequencing Tools ======
  
-  * macs python package+  * macs python package (macs2 see below)
   * http://bowtie-bio.sourceforge.net/bowtie2/index.shtml   * http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
   * https://deweylab.github.io/RSEM/   * https://deweylab.github.io/RSEM/
Line 28: Line 28:
 export LD_LIBRARY_PATH="/share/apps/CENTOS6/miniconda2/lib:$LD_LIBRARY_PATH" export LD_LIBRARY_PATH="/share/apps/CENTOS6/miniconda2/lib:$LD_LIBRARY_PATH"
 Successfully installed macs-1.4.3  # note: macs2 Python version must >= 3.6! Successfully installed macs-1.4.3  # note: macs2 Python version must >= 3.6!
 +
 +# or change python version to
 +# ls /share/apps/CENTOS6/python/2.7.9/bin/macs2
 +/share/apps/CENTOS6/python/2.7.9/bin/macs2
 +
  
 export PATH="/share/apps/CENTOS6/sequencingtools/bowtie2-2.4.1-linux-x86_64:$PATH" export PATH="/share/apps/CENTOS6/sequencingtools/bowtie2-2.4.1-linux-x86_64:$PATH"
cluster/73.txt ยท Last modified: 2024/05/15 12:58 by hmeij07

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