User Tools

Site Tools


cluster:73

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Next revision Both sides next revision
cluster:73 [2020/07/13 18:57]
hmeij07 [Mathematica]
cluster:73 [2020/07/24 17:53]
hmeij07 [Gromacs]
Line 944: Line 944:
 ====== Gromacs ===== ====== Gromacs =====
  
-Gromacs-2018 for GPU (RTX2080)+Gromacs-2020.3 for GPU (RTX2080S) 
 +  * ''exx96'' queue 
 +  * see /share/apps/CENTOS7/gromacs/2020.3.install for env 
 +  * change env in script below 
 + 
 +Gromacs-2018 for GPU (RTX2080S)
   * ''exx96'' queue   * ''exx96'' queue
   * **/zfshomes/hmeij/k20redo/run.rtx sample script**   * **/zfshomes/hmeij/k20redo/run.rtx sample script**
Line 1058: Line 1063:
   * docs: on the web   * docs: on the web
   * www:  http://www.wolfram.com/mathematica/   * www:  http://www.wolfram.com/mathematica/
 +  * Campus wide license, use any queue.
  
   * Parallel kernels   * Parallel kernels
Line 1064: Line 1070:
     * http://reference.wolfram.com/mathematica/guide/ParallelComputing.html     * http://reference.wolfram.com/mathematica/guide/ParallelComputing.html
  
-Job submissions can go to queue.+
  
 ====== Eigen ===== ====== Eigen =====
Line 1248: Line 1254:
  
 ====== LAMMPS CPU/GPU ====== ====== LAMMPS CPU/GPU ======
 +
 +** CPU ONLY v2 CentOS7 **
 +
 +  * add user-opm on next compile ... done ... binaries with string +user-omp
 +  * /share/apps/CENTOS7/lammps/3Mar2020
 +    * lmp_serial, lmp_mpi
 +  * //latest// openmpi version as of today v4.0.4
 +  * consult this file for packages installed and compilations
 +    * /share/apps/CENTOS7/lammps/03Mar2020.install
 +    * should work only on exx96 and mwgpu queues
 +
 +<code>
 + export PATH=/share/apps/CENTOS7/openmpi/4.0.4/bin:$PATH
 + export LD_LIBRARY_PATH=/share/apps/CENTOS7/openmpi/4.0.4/lib:$LD_LIBRARY_PATH
 +</code>
  
 ** CPU ONLY ** ** CPU ONLY **
Line 1260: Line 1281:
  
 ** CPU or GPU ** ** CPU or GPU **
 +
 +  * added lmp_mpi-single-single+user-omp
  
   * /share/apps/CENTOS7/lammps/3Mar2020   * /share/apps/CENTOS7/lammps/3Mar2020
cluster/73.txt · Last modified: 2024/05/15 12:58 by hmeij07