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cluster:73 [2020/07/20 17:36]
hmeij07 [LAMMPS CPU/GPU]
cluster:73 [2020/07/31 19:11]
hmeij07
Line 3: Line 3:
  
 ====== Software ====== ====== Software ======
 +
 +IMPORTANT NOTE: **Since moving to the TrueNAS/ZFS appliance all references to** ''/home/apps'' **should be replaced with** ''/share/apps'' **which points to** ''/zfshomes/apps''
 +
 + --- //[[hmeij@wesleyan.edu|Henk]] 2020/07/31 15:08//  
  
 The listings below will be updated as software is installed, location is /share/apps/ or /home/apps/ (same thing). The listings below will be updated as software is installed, location is /share/apps/ or /home/apps/ (same thing).
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 on either cottontail2 or node n33 located at /share/apps/CENTOS6 \\ on either cottontail2 or node n33 located at /share/apps/CENTOS6 \\
 Some compilations require 7.x and are in /share/apps/CENTOS7 \\ Some compilations require 7.x and are in /share/apps/CENTOS7 \\
 +
 +====== EMBOSS ======
 +
 +  * /share/apps/CENTOS6/EMBOSS
 +  * /share/apps/CENTOS6/EMBOSS/6.6.0.install (read to setup env)
 +  * https://www.ebi.ac.uk/services
 +  * jfabry/kthayer
  
 ====== Sequencing Tools #2 ====== ====== Sequencing Tools #2 ======
Line 944: Line 955:
 ====== Gromacs ===== ====== Gromacs =====
  
-Gromacs-2018 for GPU (RTX2080)+Gromacs-2020.3 for GPU (RTX2080S) 
 +  * ''exx96'' queue 
 +  * see /share/apps/CENTOS7/gromacs/2020.3.install for env 
 +  * change env in script below 
 + 
 +Gromacs-2018 for GPU (RTX2080S)
   * ''exx96'' queue   * ''exx96'' queue
   * **/zfshomes/hmeij/k20redo/run.rtx sample script**   * **/zfshomes/hmeij/k20redo/run.rtx sample script**
cluster/73.txt · Last modified: 2024/05/15 12:58 by hmeij07