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cluster:73 [2020/07/30 19:08] hmeij07 [Sequencing Tools #2] |
cluster:73 [2020/12/14 14:46] hmeij07 [DMTCP] |
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====== Software ====== | ====== Software ====== | ||
+ | |||
+ | IMPORTANT NOTE: **Since moving to the TrueNAS/ZFS appliance all references to** ''/ | ||
+ | |||
+ | --- // | ||
The listings below will be updated as software is installed, location is / | The listings below will be updated as software is installed, location is / | ||
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on either cottontail2 or node n33 located at / | on either cottontail2 or node n33 located at / | ||
Some compilations require 7.x and are in / | Some compilations require 7.x and are in / | ||
+ | |||
+ | ====== DMTCP ===== | ||
+ | |||
+ | * / | ||
+ | * this came from the CRAC source, trying to install gpu checkpoint tool | ||
+ | * [[cluster: | ||
+ | * but plugin will not compile, checking with developers 12 Dec 2020 | ||
+ | |||
+ | * Installed as package ins OS on all nodes | ||
+ | * v2.5.2 | ||
+ | * dmctp_launch ... etc | ||
====== EMBOSS ====== | ====== EMBOSS ====== | ||
- | * / | + | * / |
* / | * / | ||
* https:// | * https:// | ||
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====== LAMMPS CPU/GPU ====== | ====== LAMMPS CPU/GPU ====== | ||
+ | |||
+ | ** CPU only ** -Centos6 | ||
+ | |||
+ | * / | ||
+ | * read for env and compilation env: lmp_mpi | ||
+ | |||
+ | ** CPU only OR CPU+GPU** | ||
+ | |||
+ | * 3Mar2020 added USER-REAXC | ||
+ | * For KOKKOS MPI aware version | ||
+ | * git download of latest did not work (lots of fortran errors?) | ||
+ | * latest tarball is still 3Mar2020 (?) | ||
+ | * added user-eaxc (but had to remove package python) | ||
+ | * " | ||
+ | * please read **/ | ||
+ | |||
+ | < | ||
+ | |||
+ | # CPU | ||
+ | / | ||
+ | / | ||
+ | |||
+ | # CPU+GPU | ||
+ | / | ||
+ | |||
+ | # env | ||
+ | |||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | |||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | |||
+ | </ | ||
** CPU ONLY v2 CentOS7 ** | ** CPU ONLY v2 CentOS7 ** |