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--- cluster:73 [2020/12/14 14:45]
hmeij07 [DMTCP]
+++ cluster:73 [2021/03/01 17:09]
hmeij07 [Rstudio]
@@ Line 18: / Line 18: @@
 on either cottontail2 or node n33 located at /share/apps/CENTOS6 \\
 Some compilations require 7.x and are in /share/apps/CENTOS7 \\
+===== Rstudio =====
+  * http://our-sanscratch-server:8787/
+  * https://support.rstudio.com/hc/en-us/articles/200552316-Configuring-the-Server
+  * centos7 R v 3.6.0
+  * use your HPC username and credentials
 ====== DMTCP =====
@@ Line 24: / Line 31: @@
   * this came from the CRAC source, trying to install gpu checkpoint tool
   * [[cluster:198|GPU checkpoint/restart]]
+  * but plugin will not compile, checking with developers 12 Dec 2020
   * Installed as package ins OS on all nodes
@@ Line 226: / Line 234: @@
   * most packages found on this page
   * picked up mpirun from miniconda2 apps (that may be a problem)
+  * Added to 3.8.3 "acpipe"
+  * https://github.com/alanwilter/acpype
+ --- //[[hmeij@wesleyan.edu|Henk]] 2021/02/18 14:41//
 <code>
@@ Line 2265: / Line 2278: @@
 ====== Amber ======
+** Amber 20 **
+  * Two versions compiled,
+    * one for cuda 8.0/mpich3 for queue amber128
+    * one for queues mwgpu and exx96 (cuda 9.2/openmpi).
+  * Consult the run.amber20 script to set up environment
+    * /share/apps/CENTOS7/amber/amber20/run.amber20
+  * Both are installed in /usr/local/amber20
 ** AMBER 18 **

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