cluster:73
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cluster:73 [2021/03/01 17:08] hmeij07 [Software] |
cluster:73 [2021/04/12 19:28] hmeij07 [LAMMPS CPU/GPU] |
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| Some compilations require 7.x and are in / | Some compilations require 7.x and are in / | ||
| - | ==== Rstudio ==== | + | ====== OpenHPC ====== |
| + | |||
| + | So I remember where I put the repos ''/ | ||
| + | |||
| + | * whitetail tar ball for centos7/ | ||
| + | * http:// | ||
| + | * http:// | ||
| + | * https:// | ||
| + | |||
| + | ====== OneAPI ====== | ||
| + | |||
| + | * Requires CentOS 7 so queues mwgpu, amber128, exx96 | ||
| + | |||
| + | * Production version is installed in / | ||
| + | * source / | ||
| + | |||
| + | < | ||
| + | # which icc icx icpc icpx dpcpp ifort ifx mpirun mpicc python clang clang++ | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | # in addition these were installed | ||
| + | / | ||
| + | / | ||
| + | / | ||
| + | </ | ||
| + | |||
| + | * Test version is installed on local disk on host **greentail52** | ||
| + | * source / | ||
| + | * Read [[cluster: | ||
| + | |||
| + | |||
| + | ====== StringTie2 ====== | ||
| + | |||
| + | * Requires CentOS 7 so queues mwgpu, amber128, exx96 | ||
| + | * / | ||
| + | * https:// | ||
| + | |||
| + | ====== Rstudio | ||
| * http:// | * http:// | ||
| Line 1093: | Line 1140: | ||
| [[https:// | [[https:// | ||
| - | * program: mcc, math, mathematica (v 12.1) | + | * program: mcc, math, mathematica (v 12.2) |
| - | * install dir: / | + | * install dir: / |
| * docs: on the web | * docs: on the web | ||
| * www: http:// | * www: http:// | ||
| - | * Campus wide license, use any queue. | + | * Centos7, use queues mwgpu, amber128 or exx96 |
| + | * For GUI launch on greentail52 | ||
| * Parallel kernels | * Parallel kernels | ||
| Line 1288: | Line 1336: | ||
| ====== LAMMPS CPU/GPU ====== | ====== LAMMPS CPU/GPU ====== | ||
| + | |||
| + | ** USER_QUIP ** | ||
| + | |||
| + | This is a version of lammps (29Oct20, last stable) that contains all packages with user-quip. | ||
| + | |||
| + | It does not compile with MPI, nor ifort in CentOS7, so there is only a " | ||
| + | |||
| + | * Requires CentOS 7 so queues: mwgpu, amber128, exx96 | ||
| + | |||
| + | Read, if you wish | ||
| + | |||
| + | * / | ||
| + | * / | ||
| + | |||
| + | Environments | ||
| + | |||
| + | < | ||
| + | |||
| + | # serial - cpu only (although quippy compiled, it refused to install) | ||
| + | # MPI STUBS is compiled in | ||
| + | |||
| + | export PATH=/ | ||
| + | export LD_LIBRARY_PATH=/ | ||
| + | |||
| + | / | ||
| + | |||
| + | # serial - cpu+gpu | ||
| + | |||
| + | (to come, hopefully) | ||
| + | |||
| + | </ | ||
| ** CPU only ** -Centos6 | ** CPU only ** -Centos6 | ||
| Line 3003: | Line 3082: | ||
| ===== Intel ===== | ===== Intel ===== | ||
| - | UPDATE, 2016 parallel studio cluster edition installed | + | UPDATE |
| + | latest version of icc/icx and ifort/ifx are inside OneAPI, search this page | ||
| + | |||
| + | UPDATE | ||
| + | parallel studio cluster edition installed | ||
| * 2 ifort and 2 icc float licenses | * 2 ifort and 2 icc float licenses | ||
| Line 3031: | Line 3114: | ||
| ====== Cluster Math Kernel Libraries ====== | ====== Cluster Math Kernel Libraries ====== | ||
| + | |||
| + | * latest version in OneAPI, search this page | ||
| * see Intel parallel studio | * see Intel parallel studio | ||
| Line 3040: | Line 3125: | ||
| ====== Intel Threading Building Blocks ====== | ====== Intel Threading Building Blocks ====== | ||
| + | |||
| + | * latest version is in OneAPI, search this pages | ||
| * see Intel parallel studio | * see Intel parallel studio | ||
| Line 3054: | Line 3141: | ||
| * program: Matlab, link to binary is ' | * program: Matlab, link to binary is ' | ||
| - | * R2020a, campus wide license so no more restrictions on licenses | + | * R2020b, campus wide license so no more restrictions on licenses |
| * No Distributed Computing Engine or Matlab Parallel (for now) | * No Distributed Computing Engine or Matlab Parallel (for now) | ||
| - | * install dir: / | + | * install dir: / |
| * docs & www: http:// | * docs & www: http:// | ||
| + | * CentOS7 required use on queues mwgpu, amber128 and exx96 | ||
| + | * For GUI launch on greentail52 | ||
| Note: | Note: | ||
cluster/73.txt · Last modified: 2024/05/15 12:58 by hmeij07
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