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--- cluster:73 [2021/07/27 19:20]
hmeij07 [Miniconda3]
+++ cluster:73 [2021/08/19 12:20]
hmeij07 [Sequencing Tools #4]
@@ Line 18: / Line 18: @@
 on either cottontail2 or node n33 located at /share/apps/CENTOS6 \\
 Some compilations require 7.x and are in /share/apps/CENTOS7 \\
+====== Sequencing Tools #4 ======
+<code>
+    libgcc-7.2.0               |       h69d50b8_2         304 KB  conda-forge
+    samtools-1.7               |                1         1.0 MB  bioconda
+    bowtie2-2.2.5              |   py38hed8969a_7        11.8 MB  bioconda
+    perl-5.26.2                |    h36c2ea0_1008        15.4 MB  conda-forge
+    bedtools-2.30.0            |       hc088bd4_0        14.0 MB  bioconda
+</code>
 ====== Sequencing Tools #3 ======
@@ Line 593: / Line 607: @@
 # with local java jre1.8.0_212
 export PATH=/share/apps/CENTOS6/beast/2.6.0/bin:$PATH
+</code>
+  * https://github.com/ncbi/sra-tools/
+  * The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
+  * requires centos7 (glibc) so queues mwgpu, amber128, exx96
+<code>
+export PATH=/share/apps/CENTOS7/sratools/sratoolkit.2.11.0-centos_linux64/bin:$PATH
 </code>

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