This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
cluster:73 [2021/08/19 12:22] hmeij07 [Sequencing Tools #4] |
cluster:73 [2021/08/19 12:53] hmeij07 [Sequencing Tools #4] |
||
---|---|---|---|
Line 18: | Line 18: | ||
on either cottontail2 or node n33 located at / | on either cottontail2 or node n33 located at / | ||
Some compilations require 7.x and are in / | Some compilations require 7.x and are in / | ||
+ | |||
+ | ====== Miniconda2 ===== | ||
+ | |||
+ | * miniconda2 (python 2.7) is hiding in section | ||
+ | * " | ||
+ | * some packages require centos 6 (like cufflinks) | ||
+ | * many packages are also available in miniconda3 section | ||
+ | * requires centos 7 (python 3.9) | ||
====== Sequencing Tools #4 ====== | ====== Sequencing Tools #4 ====== | ||
+ | |||
+ | Added to miniconda3, see section " | ||
+ | |||
+ | * Requires centos7 so queues mwgpu, amber128, exx96 | ||
+ | * debug server greentail52 | ||
+ | * PREFIX=/ | ||
+ | * python 3.9 | ||
+ | * jcoolon lab | ||
+ | | ||
< | < | ||
Line 35: | Line 52: | ||
bedtools-2.30.0 | bedtools-2.30.0 | ||
+ | # cufflinks requires centos 6, weird, so also added to miniconda2, | ||
+ | # see section " | ||
</ | </ |