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cluster:73 [2021/11/04 12:10]
hmeij07
cluster:73 [2021/11/09 15:53]
hmeij07 [EasyBuild]
Line 32: Line 32:
   * astropy/4.2.1-fosscuda-2020b   * astropy/4.2.1-fosscuda-2020b
     * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:209#astropy     * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:209#astropy
 +    * contains package mpi4py, multithreading
 +    * import erfa (needs to be loaded too), added later (pycuda, h5py for helios)
 +    * to find ''libcuda.so.1'' set export path below
   * emcee/2.2.1-foss-2019a   * emcee/2.2.1-foss-2019a
     * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:209#emcee     * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:209#emcee
 +    * contains package mpi4py, multithreading
 +  * PyCUDA/2020.1-fosscuda-2020b
 +    * 
  
 To use module, discover the modules and load desired module. On ''greentail52'' (debugging) or in submit scripts on queue: exx96 (mwgpu and amber128 nodes do not work) To use module, discover the modules and load desired module. On ''greentail52'' (debugging) or in submit scripts on queue: exx96 (mwgpu and amber128 nodes do not work)
  
 <code> <code>
 +
 +# cuda libs location
 +export LD_LIBRARY_PATH=\
 +/sanscratch/CENTOS7/easybuild/4.4.2/software/CUDAcore/11.1.1/lib64:\
 +/sanscratch/CENTOS7/easybuild/4.4.2/software/CUDAcore/11.1.1/lib:\
 +/sanscratch/CENTOS7/easybuild/4.4.2/software/CUDAcore/11.1.1/targets/x86_64-linux/lib/stubs:\
 +$LD_LIBRARY_PATH
 +
  
 # discover all modules # discover all modules
Line 54: Line 68:
 # note that these modules use different python versions # note that these modules use different python versions
 which python which python
 +python
 +>>>help('modules')
  
 # unload all modules (better to exit shell and start new one, # unload all modules (better to exit shell and start new one,
cluster/73.txt ยท Last modified: 2024/05/15 12:58 by hmeij07