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cluster:73 [2021/11/04 12:10]
hmeij07 		cluster:73 [2021/11/24 18:17]
hmeij07 [Miniconda3]
Line 32: Line 32:
   * astropy/4.2.1-fosscuda-2020b   * astropy/4.2.1-fosscuda-2020b
     * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:209#astropy     * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:209#astropy
 +    * contains package mpi4py, multithreading
 +    * import erfa (needs to be loaded too), added later (pycuda, h5py for helios)
 +    * to find ''libcuda.so.1'' set export path below
   * emcee/2.2.1-foss-2019a   * emcee/2.2.1-foss-2019a
     * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:209#emcee     * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:209#emcee
 +    * contains package mpi4py, multithreading
 +  * PyCUDA/2020.1-fosscuda-2020b
 +    * 
  
 To use module, discover the modules and load desired module. On ''greentail52'' (debugging) or in submit scripts on queue: exx96 (mwgpu and amber128 nodes do not work) To use module, discover the modules and load desired module. On ''greentail52'' (debugging) or in submit scripts on queue: exx96 (mwgpu and amber128 nodes do not work)
  
 <code> <code>
 +
 +# cuda libs location
 +export LD_LIBRARY_PATH=\
 +/sanscratch/CENTOS7/easybuild/4.4.2/software/CUDAcore/11.1.1/lib64:\
 +/sanscratch/CENTOS7/easybuild/4.4.2/software/CUDAcore/11.1.1/lib:\
 +/sanscratch/CENTOS7/easybuild/4.4.2/software/CUDAcore/11.1.1/targets/x86_64-linux/lib/stubs:\
 +$LD_LIBRARY_PATH
 +
  
 # discover all modules # discover all modules
Line 54: Line 68:
 # note that these modules use different python versions # note that these modules use different python versions
 which python which python
 +python
 +>>>help('modules')
  
 # unload all modules (better to exit shell and start new one, # unload all modules (better to exit shell and start new one,
Line 110: Line 126:
  
 </code>  </code> 
 +
 +  * and
 +
 +<code>
 +
 +conda install -c conda-forge gsd
 +
 +
 +The following NEW packages will be INSTALLED:
 +
 +  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
 +  gsd                conda-forge/linux-64::gsd-2.5.1-py38h6c62de6_0
 +  libgomp            conda-forge/linux-64::libgomp-11.2.0-h1d223b6_11
 +
 +The following packages will be UPDATED:
 +
 +  certifi                          2021.10.8-py38h578d9bd_0 --> 2021.10.8-py38h578d9bd_1
 +  conda                               4.10.3-py38h578d9bd_2 --> 4.10.3-py38h578d9bd_4
 +  libgcc-ng           pkgs/main::libgcc-ng-9.1.0-hdf63c60_0 --> conda-forge::libgcc-ng-11.2.0-h1d223b6_11
 +  openssl                                 1.1.1h-h516909a_0 --> 1.1.1l-h7f98852_0
 +
 +</code>
 +
 +
  
 ====== Miniconda2 ====== ====== Miniconda2 ======
Line 522: Line 562:
     zstd-1.4.5                 |       h9ceee32_0         619 KB     zstd-1.4.5                 |       h9ceee32_0         619 KB
  
 +
 +</code>
 +
 +Then
 + --- //[[hmeij@wesleyan.edu|Henk]] 2021/11/24 13:16//
 +
 +<code>
 +
 +# using pip3
 +Successfully installed magenta-2.1.3 python-rtmidi-1.1.2
 +
 +Successfully installed keras-2.7.0 libclang-12.0.0 tensorboard-2.7.0 tensorflow-2.7.0 tensorflow-estimator-2.7.0 tensorflow-io-gcs-filesystem-0.22.0
  
 </code> </code>
cluster/73.txt ยท Last modified: 2024/05/15 12:58 by hmeij07

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