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cluster:73 [2021/12/06 15:51]
hmeij07 [Hoomd] 		cluster:73 [2022/03/02 15:00]
hmeij07 [Magenta]
Line 19: Line 19:
 Some compilations require 7.x and are in /share/apps/CENTOS7 \\ Some compilations require 7.x and are in /share/apps/CENTOS7 \\
  
 +
 +====== HPC SDK ======
 +
 +    * https://dokuwiki.wesleyan.edu/doku.php?id=cluster:212
 +    * Nvidia SDK v 22.2
  
 ====== Magenta ====== ====== Magenta ======
Line 597: Line 602:
  
 </code> </code>
 +
 +Added\\
 + --- //[[hmeij@wesleyan.edu|Henk]] 2022/01/03 14:35//\\
 +# https://github.com/merenlab/anvio/issues/1479
 +
 +<code>
 +
 +conda install -c bioconda samtools=1.9 --force-reinstall
 +
 +
 +The following NEW packages will be INSTALLED:
 +
 +  gettext            conda-forge/linux-64::gettext-0.19.8.1-hf34092f_1004
 +  htslib             bioconda/linux-64::htslib-1.9-h4da6232_3
 +  libdeflate         bioconda/linux-64::libdeflate-1.2-h516909a_1
 +  libglib            conda-forge/linux-64::libglib-2.66.3-hbe7bbb4_0
 +  libiconv           conda-forge/linux-64::libiconv-1.16-h516909a_0
 +
 +The following packages will be UPDATED:
 +
 +  cffi                pkgs/main::cffi-1.14.3-py38h261ae71_2 --> conda-forge::cffi-1.14.4-py38ha312104_0
 +  libedit            pkgs/main::libedit-3.1.20191231-h14c3~ --> conda-forge::libedit-3.1.20191231-h46ee950_2
 +  samtools                                            1.7-1 --> 1.9-h10a08f8_12
 +
 +The following packages will be SUPERSEDED by a higher-priority channel:
 +
 +  glib                    pkgs/main::glib-2.69.0-h5202010_0 --> conda-forge::glib-2.66.3-h58526e2_0
 +  libffi                   pkgs/main::libffi-3.3-he6710b0_2 --> conda-forge::libffi-3.2.1-he1b5a44_1007
 +  ncurses                 pkgs/main::ncurses-6.2-he6710b0_1 --> conda-forge::ncurses-6.1-hf484d3e_1002
 +  python                 pkgs/main::python-3.8.5-h7579374_1 --> conda-forge::python-3.8.3-cpython_he5300dc_0
 +  sqlite                pkgs/main::sqlite-3.33.0-h62c20be_0 --> conda-forge::sqlite-3.32.3-hcee41ef_1
 +
 +$ samtools --version
 +samtools 1.9
 +Using htslib 1.9
 +Copyright (C) 2018 Genome Research Ltd.
 +
 +</code>
 +
  
 ====== pytraj ====== ====== pytraj ======
Line 2958: Line 3002:
   * https://edwards.sdsu.edu/research/c11-on-centos-6/   * https://edwards.sdsu.edu/research/c11-on-centos-6/
     * C11++ on CentOS6, two version of gcc     * C11++ on CentOS6, two version of gcc
-    * read the R-3.6.1_configure file in ''/share/apps/src/cottontail2''+    * read the R-3.6.1_configure file in ''/share/apps/CENTOS6/R/R-3.6.1_configure''
  
 <code> <code>
cluster/73.txt ยท Last modified: 2024/05/15 12:58 by hmeij07

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