cluster:73
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cluster:73 [2022/01/03 19:39] hmeij07 [Miniconda3] |
cluster:73 [2022/04/01 14:13] hmeij07 [Paleogenomics Tools] |
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| Some compilations require 7.x and are in / | Some compilations require 7.x and are in / | ||
| + | |||
| + | ====== HPC SDK ====== | ||
| + | |||
| + | * https:// | ||
| + | * Nvidia SDK v 22.2 | ||
| ====== Magenta ====== | ====== Magenta ====== | ||
| Line 687: | Line 692: | ||
| ====== OpenHPC ====== | ====== OpenHPC ====== | ||
| - | So I remember where I put the repos ''/ | + | So I remember where I put the tar repo file |
| - | * whitetail tar ball for centos7/ | + | * OpenHPC v2.4 |
| - | * http:// | + | * Rocky 8.5 |
| - | * http://repos.openhpc.community/ohpc-1.3/1.3.9/ | + | * Slurm 20.11.8 |
| - | * https://github.com/ | + | * Warewulf 3.9 |
| + | * x86_64 | ||
| + | |||
| + | < | ||
| + | |||
| + | [root@cottontail2 ~]# ll /share/apps/src/cottontail2/ | ||
| + | total 8290421 | ||
| + | -rw------- 1 root root | ||
| + | -rw-r--r-- 1 root root 10720 Mar 17 09:35 ohpc-release-2-1.el8.x86_64.rpm | ||
| + | -rw-r--r-- 1 root root 8531681280 Mar 17 09:33 OpenHPC-2.4.EL_8.x86_64.tar | ||
| + | |||
| + | </code> | ||
| ====== OneAPI ====== | ====== OneAPI ====== | ||
| Line 903: | Line 919: | ||
| </ | </ | ||
| + | * **mapDamage2** | ||
| + | * https:// | ||
| + | * docker container is broke | ||
| + | * requires centos6 so queues hp12, mw128 | ||
| + | * conda install -c ' | ||
| + | |||
| + | |||
| + | < | ||
| + | |||
| + | # env | ||
| + | export PATH="/ | ||
| + | export LD_LIBRARY_PATH="/ | ||
| + | |||
| + | The following NEW packages will be INSTALLED: | ||
| + | |||
| + | mapdamage2 | ||
| + | pysam bioconda/ | ||
| + | seqtk bioconda/ | ||
| + | |||
| + | [hmeij@petaltail ~]$ mapDamage --version | ||
| + | 2.0.6 | ||
| + | |||
| + | </ | ||
| Line 2997: | Line 3036: | ||
| * https:// | * https:// | ||
| * C11++ on CentOS6, two version of gcc | * C11++ on CentOS6, two version of gcc | ||
| - | * read the R-3.6.1_configure file in ''/ | + | * read the R-3.6.1_configure file in ''/ |
| < | < | ||
cluster/73.txt · Last modified: 2024/05/15 12:58 by hmeij07
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