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cluster:73 [2022/03/17 13:53]
hmeij07 [OpenHPC]
cluster:73 [2022/04/01 14:09]
hmeij07 [Paleogenomics Tools]
Line 696: Line 696:
   * OpenHPC v2.4   * OpenHPC v2.4
   * Rocky 8.5   * Rocky 8.5
-  * Slurm v? +  * Slurm 20.11.8 
-  * Warewulf v3.9+  * Warewulf 3.9
   * x86_64   * x86_64
  
Line 919: Line 919:
 </code> </code>
  
 +  * **mapDamage2**
 +  * https://github.com/ginolhac/mapDamage/issues/25
 +  * docker container is broke
 +  * requires centos6 so queues hp12, mw128
 +  * conda install -c 'bioconda' mapdamage2
 +
 +
 +<code>
 +
 +# env
 +export PATH="/share/apps/CENTOS6/miniconda2/bin:$PATH"
 +export LD_LIBRARY_PATH="/share/apps/CENTOS6/miniconda2/lib:$LD_LIBRARY_PATH"
 +
 +The following NEW packages will be INSTALLED:
 +
 +  mapdamage2         bioconda/linux-64::mapdamage2-2.0.6-1
 +  pysam              bioconda/linux-64::pysam-0.16.0.1-py27hc729bab_3
 +  seqtk              bioconda/linux-64::seqtk-1.3-h5bf99c6_3
 +
 +
 +</code>
  
  
cluster/73.txt · Last modified: 2024/05/15 12:58 by hmeij07