Differences

This shows you the differences between two versions of the page.

--- cluster:73 [2022/04/07 14:50]
hmeij07
+++ cluster:73 [2022/04/25 18:29]
hmeij07 [Paleogenomics Tools]
@@ Line 318: / Line 318: @@
 ** Flye **
+Somewhat annoying, no miniconda3 package, so local install, use minconda3 env
+  * v2.9
+  * python bin/flye
+<code>
+export PATH=/share/apps/CENTOS7/flye/2.9/bin:$PATH
+export LD_LIBRARY_PATH=/share/apps/CENTOS7/flye/2.9/lib:$LD_LIBRARY_PATH
+which flye
+/share/apps/CENTOS7/flye/2.9/bin/flye
+flye --version
+.9-b1774
+</code>
   * https://github.com/fenderglass/Flye
@@ Line 947: / Line 963: @@
 </code>
+  * PCAngsd, requires miniconda3's python
+<code>
+source /share/apps/CENTOS7/amber/miniconda3/etc/profile.d/conda.sh
+export PATH=/share/apps/CENTOS7/amber/miniconda3/bin:$PATH
+export LD_LIBRARY_PATH=/share/apps/CENTOS7/amber/miniconda3/lib:$LD_LIBRARY_PATH
+which pcangsd
+/share/apps/CENTOS7/amber/miniconda3/bin/pcangsd
+pcangsd --version
+pcangsd 1.10
+</code>

DokuWiki