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cluster:73 [DokuWiki]

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cluster:73 [2022/04/25 09:47]
hmeij07 [Sequencing Tools #3]
cluster:73 [2022/04/25 14:30]
hmeij07 [Paleogenomics Tools]
Line 963: Line 963:
  
 </code> </code>
 +
 +  * **PCAngsd**, requires miniconda3's python
 +  * https://github.com/Rosemeis/pcangsd
 +
 +<code>
 +
 +source /share/apps/CENTOS7/amber/miniconda3/etc/profile.d/conda.sh
 +export PATH=/share/apps/CENTOS7/amber/miniconda3/bin:$PATH
 +export LD_LIBRARY_PATH=/share/apps/CENTOS7/amber/miniconda3/lib:$LD_LIBRARY_PATH
 +
 +which pcangsd
 +/share/apps/CENTOS7/amber/miniconda3/bin/pcangsd
 +pcangsd --version
 +pcangsd 1.10
 +
 +</code>
 +
 +
  
  
cluster/73.txt ยท Last modified: 2024/05/15 08:58 by hmeij07