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cluster:73 [DokuWiki]

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cluster:73 [2022/04/25 14:30]
hmeij07 [Paleogenomics Tools]
cluster:73 [2022/04/26 16:21]
hmeij07 [Paleogenomics Tools]
Line 966: Line 966:
   * **PCAngsd**, requires miniconda3's python   * **PCAngsd**, requires miniconda3's python
   * https://github.com/Rosemeis/pcangsd   * https://github.com/Rosemeis/pcangsd
 +  * apparently the repo is needed ''/share/apps/CENTOS7/pcangsd/1.1.0''
  
 <code> <code>
Line 980: Line 981:
 </code> </code>
  
 +  * **Standard RAxML version**
 +  * https://github.com/stamatak/standard-RAxML
  
 +<code>
 +
 +# add path to $PATH
 +
 +[hmeij@greentail52 tmp]$ ll /share/apps/CENTOS7/raxml/8.2.12/
 +total 3202
 +-rwxr-xr-x 1 hmeij its 1177632 Apr 25 14:49 raxmlHPC-AVX
 +-rwxr-xr-x 1 hmeij its 1177632 Apr 25 14:49 raxmlHPC-AVX2
 +-rwxr-xr-x 1 hmeij its 1152040 Apr 25 14:49 raxmlHPC_serial
 +-rwxr-xr-x 1 hmeij its 1185704 Apr 25 14:49 raxmlHPC-SSE3
 +
 +</code>
  
  
cluster/73.txt ยท Last modified: 2024/05/15 08:58 by hmeij07