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--- cluster:73 [2022/11/07 18:57]
hmeij07 [Miniconda3]
+++ cluster:73 [2022/12/01 18:57]
hmeij07 [HPC SDK]
@@ Line 23: / Line 23: @@
 on either cottontail2 or node n33 located at /share/apps/CENTOS6 \\
 Some compilations require 7.x and are in /share/apps/CENTOS7 \\
+====== Trimmomatic ======
+  * http://www.usadellab.org/cms/?page=trimmomatic
+  * binary download and stage
+<code>
+/share/apps/CENTOS6/Trimmomatic-0.39/
+[root@cottontail Trimmomatic-0.39]# ll
+total 176
+drwxr-xr-x 2 root root      8 Apr  8  2019 adapters
+-rw-r--r-- 1 root root  35147 May 16  2018 LICENSE
+-rw-r--r-- 1 root root 128502 Apr  8  2019 trimmomatic-0.39.jar
+</code>
@@ Line 688: / Line 706: @@
 IQ-TREE multicore version 2.0.3 for Linux 64-bit built Dec 20 2020
-# https://userguide.mdanalysis.org/stable/installation.html
-# calterlab, annika
+</code>
+  * https://userguide.mdanalysis.org/stable/installation.html
+  * calterlab, annika (used pip to install)
+<code>
 Successfully installed
@@ Line 695: / Line 718: @@
 fasteners-0.18 mmtf-python-1.1.3
 mrcfile-1.4.3 msgpack-1.0.4 numpy-1.23.4
 </code>

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