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--- cluster:73 [2023/04/27 14:30]
hmeij07 [LAMMPS CPU/GPU]
+++ cluster:73 [2023/06/01 14:24]
hmeij07 [Sequencing Tools #3]
@@ Line 346: / Line 346: @@
 ** Flye **
-Somewhat annoying, no miniconda3 package, so local install, use minconda3 environment as listed top of this section (python 3.9, gcc 9.2)
+Somewhat annoying, no miniconda3 package, so local install, use minconda3 environment as listed top of this section (python 3.9, gcc 9.2). Local building (without installation) on centos7 greentail52.
+  * v2.9.2 (June 2023)
+  * python bin/flye
+    * chnage the PATHS accordingly
+<code>
+/share/apps/CENTOS7/flye/2.9.2/bin/flye --version
+.9.2-b1794
+</code>
   * v2.9.1 (October 2022)
@@ Line 2282: / Line 2293: @@
   * 3 cuda versions with 3 different precision settings
   * notes: /share/apps/CENTOS7/lammps/25Apr2023.install
+  * does **not** support openmp, look for the OpenHPC version for that
+  * 05/24/2023 remade with package CREATION added
 <code>
@@ Line 2287: / Line 2300: @@
 # CPU
+ export PATH=/share/apps/CENTOS7/gcc/6.5.0/bin/:$PATH
+ export LD_LIBRARY_PATH=/share/apps/CENTOS7/gcc/6.5.0/lib64:$LD_LIBRARY_PATH
  export PATH=/share/apps/CENTOS7/python/3.8.3/bin:$PATH
  export LD_LIBRARY_PATH=/share/apps/CENTOS7/python/3.8.3/lib:$LD_LIBRARY_PATH
  export PATH=/share/apps/CENTOS7/openmpi/4.0.4/bin:$PATH
  export LD_LIBRARY_PATH=/share/apps/CENTOS7/openmpi/4.0.4/lib:$LD_LIBRARY_PATH
- which mpirun mpicc python
+ which mpirun mpicc python gcc
 # CPU + GPU (exx96 queue, may run on test and amber128 queues)
@@ Line 2302: / Line 2318: @@
 # related for starrlab
+# https://pacemaker.readthedocs.io/en/latest/pacemaker/install/
 [hmeij@cottontail2 ~]$ module load miniconda3/py39

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