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cluster:73 [2023/06/12 14:02] hmeij07 [LAMMPS CPU/GPU] |
cluster:73 [2023/07/04 12:22] hmeij07 [Sequencing Tools #3] |
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</ | </ | ||
- | * https:// | ||
- | * miniconda3 | ||
- | * De novo assembler for single molecule sequencing reads using repeat graphs | ||
- | * v2.8.3 | ||
- | < | ||
- | |||
- | # To activate this environment, | ||
- | # $ conda activate flye | ||
- | # To deactivate an active environment, | ||
- | # $ conda deactivate | ||
- | |||
- | </ | ||
** Filtlong ** | ** Filtlong ** | ||
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< | < | ||
+ | |||
+ | # Note: you must add this line to you env | ||
+ | export LD_LIBRARY_PATH=/ | ||
+ | |||
+ | # Note2: had to install 'conda install cudnn' and make two links | ||
+ | to higher level libraries (a must not do) | ||
+ | for libcudnn.so.8 and libcusolver.so.11 | ||
[hmeij@greentail52 ~]$ which python | [hmeij@greentail52 ~]$ which python | ||
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[[https:// | [[https:// | ||
+ | |||
+ | * program v13,2.1 installed | ||
+ | |||
+ | * program v13.2 installed | ||
* program: mcc, math, mathematica (v 12.2) | * program: mcc, math, mathematica (v 12.2) | ||
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====== Matlab ====== | ====== Matlab ====== | ||
+ | * installed R2023a | ||
+ | * installed R2022a | ||
+ | |||
+ | * installed R2021a | ||
* program: Matlab, link to binary is ' | * program: Matlab, link to binary is ' | ||
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====== Stata ====== | ====== Stata ====== | ||
+ | |||
+ | * program stata[-mp|-se] in your $PATH, version 18 | ||
+ | * v17 will still run so add ' | ||
+ | * so that makes for 12 licenses 8-) | ||
* program: Stata v 17, 6-user network license, includes stata, stata-mp, stata-se | * program: Stata v 17, 6-user network license, includes stata, stata-mp, stata-se |