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cluster:73 [2023/06/27 20:41] hmeij07 [Matlab] |
cluster:73 [2023/07/05 19:43] hmeij07 [Sequencing Tools #3] |
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** Flye ** | ** Flye ** | ||
- | Somewhat annoying, no miniconda3 package, | + | Somewhat annoying, no miniconda3 package, (python 3.9, gcc 9.2). Local building (without installation) on centos7 greentail52. |
+ | * setup env as for all packages in #3, see top of section | ||
* v2.9.2 (June 2023) | * v2.9.2 (June 2023) | ||
* python bin/flye | * python bin/flye | ||
- | * chnage | + | * change |
< | < | ||
Line 384: | Line 385: | ||
</ | </ | ||
- | * https:// | ||
- | * miniconda3 | ||
- | * De novo assembler for single molecule sequencing reads using repeat graphs | ||
- | * v2.8.3 | ||
- | < | ||
- | |||
- | # To activate this environment, | ||
- | # $ conda activate flye | ||
- | # To deactivate an active environment, | ||
- | # $ conda deactivate | ||
- | |||
- | </ | ||
** Filtlong ** | ** Filtlong ** |