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cluster:73 [2023/07/05 19:43]
hmeij07 [Sequencing Tools #3]
cluster:73 [2023/07/06 18:21]
hmeij07 [Paleogenomics Tools]
Line 1092: Line 1092:
 pcangsd --version pcangsd --version
 pcangsd 1.10 pcangsd 1.10
 +
 +</code>
 +
 +  * **angsd**, requires miniconda3, same environment as pcangsd
 +  * http://www.popgen.dk/angsd/index.php/RealSFS
 +  * add location of angsd to PATH env 
 +
 +<code>
 +
 +$ pwd
 +/share/apps/CENTOS7/angsd/0.940/angsd
 +
 +$ ls -l angsd
 +-rwxr-xr-x 1 hmeij its 5517248 Jul  6 14:11 angsd
 +
 +$ ./angsd 
 + -> angsd version: 0.940-dirty (htslib: 1.16) build(Jul  6 2023 14:11:30)
  
 </code> </code>
cluster/73.txt ยท Last modified: 2024/05/15 12:58 by hmeij07