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cluster:73 [2023/07/05 19:43] hmeij07 [Sequencing Tools #3] |
cluster:73 [2023/07/12 14:15] hmeij07 [Trimmomatic] |
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- | ====== | + | ===== Masurca |
+ | |||
+ | |||
+ | module: masurca/ | ||
+ | https:// | ||
+ | supports openmp (maybe) | ||
+ | queues mwgpu, exx96 (centos 7) | ||
+ | |||
+ | |||
+ | < | ||
+ | |||
+ | export PATH=/ | ||
+ | export LD_LIBRARY_PATH=/ | ||
+ | |||
+ | </ | ||
+ | |||
+ | ===== Trimmomatic | ||
* http:// | * http:// | ||
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pcangsd --version | pcangsd --version | ||
pcangsd 1.10 | pcangsd 1.10 | ||
+ | |||
+ | </ | ||
+ | |||
+ | * **angsd**, requires miniconda3, same environment as pcangsd | ||
+ | * http:// | ||
+ | * add location of angsd to PATH env | ||
+ | |||
+ | < | ||
+ | |||
+ | $ pwd | ||
+ | / | ||
+ | |||
+ | $ ls -l angsd | ||
+ | -rwxr-xr-x 1 hmeij its 5517248 Jul 6 14:11 angsd | ||
+ | |||
+ | $ ./ | ||
+ | -> angsd version: 0.940-dirty (htslib: 1.16) build(Jul | ||
</ | </ |