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--- cluster:73 [2023/07/12 14:16]
hmeij07 [Masurca]
+++ cluster:73 [2023/08/21 13:43]
hmeij07 [Miniconda3-py311]
@@ Line 25: / Line 25: @@
+====== Miniconda3-py311 ======
+  * Starting a new branch, the other Miniconda3 section listed on this is quite loaded
+  * Python 3.11
+<code>
+source /share/apps/CENTOS7/miniconda3-py311/etc/profile.d/conda.sh
+export PATH=/share/apps/CENTOS7/miniconda3-py311/bin:$PATH
+export LD_LIBRARY_PATH=/share/apps/CENTOS7/miniconda3-py311/lib:$LD_LIBRARY_PATH
+which mpirun python conda
+conda list
+</code>
 ====== Masurca ======
-    module: masurca/4.1.0
+  * module: masurca/4.1.0
-    https://github.com/alekseyzimin/masurca/releases
+  * https://github.com/alekseyzimin/masurca/releases
-    supports openmp (maybe)
+  * supports openmp (maybe)
-    queues mwgpu, exx96 (centos 7)
+  * queues mwgpu, exx96 (centos 7)
@@ Line 39: / Line 54: @@
 export PATH=/share/apps/CENTOS7/masurca/4.1.0/bin:$PATH
 export LD_LIBRARY_PATH=/share/apps/CENTOS7/masurca/4.1.0/lib:$LD_LIBRARY_PATH
+[hmeij@cottontail2 ~]$ masurca --version
+version 4.1.0
 </code>
-===== Trimmomatic =====
+====== Trimmomatic ======
   * http://www.usadellab.org/cms/?page=trimmomatic
@@ Line 432: / Line 452: @@
 </code>
+** BBmap **
+  * location: /share/apps/CENTOS7/bbmap/39.01
+  * java programs
+  * https://sourceforge.net/projects/bbmap/
 ====== Galario CPU+GPU ======
@@ Line 783: / Line 809: @@
   * git clone https://github.com/Amber-MD/pytraj; cd pytra
   * python ./setup.py install
-  * requires CentOS7 so queues mwgpu, amber128 and exx96
+  * requires CentOS7 so queues mwgpu, <del>amber128</del> and exx96
   * or for debugging use greentail52
   * /share/apps/CENTOS7/amber/pytraj

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