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cluster:116 [2013/08/06 19:27]
hmeij 		cluster:116 [2014/02/04 18:57] (current)
hmeij
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 \\ \\
 **[[cluster:0|Back]]** **[[cluster:0|Back]]**
 +
 +Since deployment of sharptail the information below is out of date. /home is now the same across the entire HPCC and served out by sharptail.
 +
 + --- //[[hmeij@wesleyan.edu|Meij, Henk]] 2014/02/04 13:56//
  
 ===== Sharptail Cluster ===== ===== Sharptail Cluster =====
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 ==== /sanscratch ==== ==== /sanscratch ====
  
-Sharptail will provide the users (and scheduler) with another 5 TB scratch file system.  During this period it is only provided to the sharptail nodes (n33-n37). In the future it will provide this file system to all nodes except greentail nodes (n1-n32).  +Sharptail will provide the users (and scheduler) with another 5 TB scratch file system.  It is only provided to the sharptail nodes (n33-n37). All other nodes will have /sanscratch provided by greentail.  You can follow the progress of your by looking into /sanscratch/JOBPID directory on either greentail or sharptail.
  
   * Please offload as much IO from /home by staging your jobs in /sanscratch   * Please offload as much IO from /home by staging your jobs in /sanscratch
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 In both cases you do not need to target any specific core, the operating system will handle that part of the scheduling. In both cases you do not need to target any specific core, the operating system will handle that part of the scheduling.
 +
 +==== NOTE ====
 +
 +
 +----
 +
 +Instructions below are obsolete, resources are now available via the scheduler.
 +
 +Please read [[cluster:119|Submitting GPU Jobs]]
 +
 + --- //[[hmeij@wesleyan.edu|Meij, Henk]] 2013/08/21 10:46//
 +
 +----
  
  
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 # you only need one cpu core # you only need one cpu core
-[hmeij@sharptail nucleosome]$ mpirun_rsh -ssh -hostfile ~/sharptail/hostfile -np 1 /cm/shared/apps/amber/amber12/bin/pmemd.cuda.MPI -O -o mdout.1K10 -inf mdinfo.1K10 -x mdcrd.1K10 -r restrt.1K10 -ref inpcrd &+[hmeij@sharptail nucleosome]$ mpirun_rsh -ssh -hostfile ~/sharptail/hostfile -np 1 \ 
 +/cm/shared/apps/amber/amber12/bin/pmemd.cuda.MPI -O -o mdout.1K10 -inf mdinfo.1K10 -x mdcrd.1K10 -r restrt.1K10 -ref inpcrd &
  
 </code> </code>
cluster/116.1375817234.txt.gz · Last modified: 2013/08/06 19:27 by hmeij

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