cluster:156
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| cluster:156 [2017/04/04 14:18] – hmeij07 | cluster:156 [2017/04/05 14:42] (current) – [OpenHPC page 3] hmeij07 | ||
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| </ | </ | ||
| - | Finish | + | Finish |
| {{: | {{: | ||
| + | As user '' | ||
| + | |||
| + | < | ||
| + | |||
| + | module avail | ||
| + | module spider | ||
| + | which mpicc | ||
| + | module load gnu/5.4.0 | ||
| + | module load openmpi/ | ||
| + | which gcc | ||
| + | which mpicc | ||
| + | mpicc -O3 / | ||
| + | cp / | ||
| + | which prun | ||
| + | find / | ||
| + | module spider prun | ||
| + | module load prun/1.1 | ||
| + | which prun | ||
| + | sbatch job.mpi | ||
| + | squeue | ||
| + | |||
| + | </ | ||
| + | |||
| + | You do need to install the Infiniband section so you can run over ethernet with OpenMPI | ||
| + | |||
| + | < | ||
| + | |||
| + | yum -y groupinstall " | ||
| + | yum -y install infinipath-psm | ||
| + | systemctl enable rdma | ||
| + | systemctl start rdma | ||
| + | |||
| + | # recipe is missing this: flavor openmpi | ||
| + | |||
| + | yum -y --installroot=/ | ||
| + | |||
| + | # remake vnfs | ||
| + | |||
| + | </ | ||
| + | |||
| + | The following shows up when running MPI over ethernet | ||
| + | |||
| + | < | ||
| + | |||
| + | [prun] Master compute host = n29 | ||
| + | [prun] Resource manager = slurm | ||
| + | [prun] Launch cmd = mpirun ./a.out | ||
| + | -------------------------------------------------------------------------- | ||
| + | [[49978, | ||
| + | was unable to find any relevant network interfaces: | ||
| + | |||
| + | Module: OpenFabrics (openib) | ||
| + | Host: n31 | ||
| + | |||
| + | Another transport will be used instead, although this may result in | ||
| + | lower performance. | ||
| + | -------------------------------------------------------------------------- | ||
| + | |||
| + | | ||
| + | --> Process # 2 of 8 is alive. -> n29.localdomain | ||
| + | --> Process # 3 of 8 is alive. -> n29.localdomain | ||
| + | --> Process # 0 of 8 is alive. -> n29.localdomain | ||
| + | --> Process # 1 of 8 is alive. -> n29.localdomain | ||
| + | --> Process # 6 of 8 is alive. -> n31.localdomain | ||
| + | --> Process # 7 of 8 is alive. -> n31.localdomain | ||
| + | --> Process # 4 of 8 is alive. -> n31.localdomain | ||
| + | --> Process # 5 of 8 is alive. -> n31.localdomain | ||
| + | |||
| + | </ | ||
| + | See page 4 for ib0 configuration which is incomplete on the recipe. | ||
| + | |||
| + | [[cluster: | ||
| \\ | \\ | ||
| **[[cluster: | **[[cluster: | ||
cluster/156.1491315481.txt.gz · Last modified: by hmeij07
